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[182328_at]

Description K03C7.1 /REP_DB=WormBase Gene ID /WP=CE04715 /TR=Q21186 /GB=AAA81138.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 18      4grp_high_8_8 > 41      6grp_highest_nonorm > 70      6grp_total > 16      4grp_total > 54      6grp_highest_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 504
1 2 3 4 range
A 445.6
(3)
P 		255.4
(-0.1)
P 		202.6
(-1)
P 		82.7
(-3)
A 		363
B 586.2
(3)
P 		288.2
(-0.6)
P 		112.5
(-2.8)
P 		93.3
(-3)
P 		493
C 356.4
(3)
P 		271.5
(1.1)
P 		227.4
(0.2)
P 		84.6
(-3)
P 		272
avr 462.7
(3) 		271.7
(-0) 		180.8
(-1.5) 		86.9
(-3) 		376

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 486
1 2 3 4 5 6 range
A 393.6
(3)
P 		307
(0.9)
P 		146.9
(-3)
P 		205.7
(-1.6)
P 		191.9
(-1.9)
P 		202.1
(-1.7)
P 		247
B 579.5
(3)
P 		363.2
(-0.3)
P 		208.2
(-2.6)
P 		181.1
(-3)
P 		200.7
(-2.7)
P 		269.1
(-1.7)
P 		398
C 499.7
(3)
P 		317.3
(0.3)
P 		222.5
(-1.1)
P 		93.8
(-3)
P 		283.8
(-0.2)
P 		153.6
(-2.1)
P 		406
avr 490.9
(3) 		329.2
(0.1) 		192.5
(-2.4) 		160.2
(-3) 		225.5
(-1.8) 		208.3
(-2.1) 		331
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 162.3
(3)
P 		55.4
(-1.3)
P 		53
(-1.4)
P 		12.1
(-3)
A 		150
B 186.9
(3)
P 		71.2
(-1.2)
P 		26.1
(-2.8)
P 		19.9
(-3)
P 		167
C 118
(3)
P 		78.1
(0.7)
P 		79.2
(0.8)
P 		14.3
(-3)
P 		104
avr 155.7
(3) 		68.2
(-0.7) 		52.8
(-1.4) 		15.4
(-3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 183
1 2 3 4 5 6 range
A 72.6
(0.2)
P 		109.2
(3)
P 		32
(-3)
P 		52.2
(-1.4)
P 		57.9
(-1)
P 		49.2
(-1.7)
P 		77
B 201.7
(3)
P 		120.9
(-0.2)
P 		50.6
(-2.9)
P 		48
(-3)
P 		81.6
(-1.7)
P 		100.4
(-1)
P 		154
C 185.2
(3)
P 		96.8
(-0.2)
P 		56.6
(-1.6)
P 		18.9
(-3)
P 		91.8
(-0.4)
P 		51.4
(-1.8)
P 		166
avr 153.2
(3) 		109
(0.7) 		46.4
(-2.6) 		39.7
(-3) 		77.1
(-1) 		67
(-1.6) 		114
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182328_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18540
Sequence Type Exemplar sequence
Representative Public ID K03C7.1 NCBI
Target Description K03C7.1 /REP_DB=WormBase Gene ID /WP=CE04715 /TR=Q21186 /GB=AAA81138.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076262(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076262 NCBI Caenorhabditis elegans K03C7.1 (K03C7.1) mRNA, complete cds. 11/11 None
SNAP00000013643 ENSEMBL cdna:SNAP chromosome:CEL140:X:3811364:3815346:1 10/11 None
GENEFINDER00000013648 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3811426:3816271:1 11/11 None
K03C7.1 ENSEMBL cdna:known chromosome:CEL140:X:3811426:3816392:1 gene:K03C7.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3811426-3815347(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K03C7.1
Entrez Gene 3565376 Entrez gene
SwissProt Q21186 EMBL-EBI
WormBase CE31195 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1625282_AT dm
DROSOPHILA_2:1625261_X_AT dm
DROSGENOME1:148184_AT dm
Protein Similarities
Method ID Description E-Value
blast AAA81138 Hypothetical protein K03C7.1 [Caenorhabditis elegans] ref|NP_508663.2| K03C7.1 [Caenorhabditis elegans] 1.0E-148
blast AAA81138 Hypothetical protein K03C7.1 [Caenorhabditis elegans] ref|NP_508663.2| K03C7.1 [Caenorhabditis elegans] 1.0E-138
blast CAE68488 Hypothetical protein CBG14291 [Caenorhabditis briggsae] 1.0E-134
blast CAE68488 Hypothetical protein CBG14291 [Caenorhabditis briggsae] 1.0E-129
blast CAE68488 Hypothetical protein CBG14291 [Caenorhabditis briggsae] 1.0E-128
Sequence
Target Sequence 
>C. ELEGANS:182328_AT
gtatgggggctttcggtaagagtagagccgcaaatgtggaagtcaactttggagacaagc
ctattgtgcagggagcggtcgattcaaaaactgttattccactgtggaatgacgaatcaa
aatgtgccaatcgtagtggcatgacggcgtttggagcacctcgggaaattgatcagaacg
ttgttgatcatcataaaggaaaaagtcaaggtatcattccattattggctaaaggaacaa
cttatcatcctcacggcgagtatggaactattcgcagacagactgctgatgtaaagtaca
aagatggctggaaacctggaatggatagcgaatcgcatggttttatttctcgacaattca
ttgcgaattcaaaggaaaaagctggaagtaacttgttggacaagaggcgaactattattt
cggatgcactgccacaatccaaagagtgtgaagccatgattccattgatgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATGGGGGCTTTCGGTAAGAGTAG 703 431 1970 Antisense
CAAGCCTATTGTGCAGGGAGCGGTC 460 185 2025 Antisense
GGGAGCGGTCGATTCAAAAACTGTT 640 493 2040 Antisense
GTGGCATGACGGCGTTTGGAGCACC 664 491 2105 Antisense
GGAGCACCTCGGGAAATTGATCAGA 351 519 2122 Antisense
GTCAAGGTATCATTCCATTATTGGC 111 463 2174 Antisense
AACTTATCATCCTCACGGCGAGTAT 646 137 2208 Antisense
GCGAATCGCATGGTTTTATTTCTCG 175 289 2297 Antisense
GAACTATTATTTCGGATGCACTGCC 494 349 2378 Antisense
GATGCACTGCCACAATCCAAAGAGT 406 413 2392 Antisense
GTGAAGCCATGATTCCATTGATGTT 558 481 2417 Antisense
Sequence Source Affymetrix Proprietary Database