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[182326_at]

Description K09H9.1 /REP_DB=WormBase Gene ID /WP=CE18036 /TR=O44994 /GB=AAB97574.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 21      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 33.8
(1.3)
A 		44.6
(2.8)
A 		4.1
(-3)
A 		46
(3)
A 		42
B 35
(3)
A 		7
(-2.4)
A 		4.1
(-3)
A 		26.8
(1.4)
A 		31
C 23.8
(-1.2)
A 		7.7
(-2.9)
A 		6.3
(-3)
A 		64.5
(3)
A 		58
avr 30.9
(0.8) 		19.8
(-0.8) 		4.8
(-3) 		45.8
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 52.3
(3)
A 		28.6
(0.1)
A 		5.9
(-2.7)
A 		3.8
(-3)
A 		6.6
(-2.7)
A 		16.6
(-1.4)
A 		49
B 5.5
(-2.4)
A 		23.6
(0.3)
A 		42.7
(3)
A 		1.9
(-2.9)
A 		1
(-3)
A 		24.5
(0.4)
A 		42
C 4.9
(-2.7)
A 		7.5
(-2.3)
A 		18.8
(-1)
A 		51
(3)
A 		7.4
(-2.3)
A 		2.1
(-3)
A 		49
avr 20.9
(2.5) 		19.9
(2.1) 		22.5
(3) 		18.9
(1.8) 		5
(-3) 		14.4
(0.2) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 12.3
(3)
A 		9.7
(1.6)
A 		1.1
(-3)
A 		6.7
(-0)
A 		11
B 11.1
(3)
A 		1.7
(-2.5)
A 		0.9
(-3)
A 		5.7
(-0.2)
A 		10
C 7.9
(0.9)
A 		2.2
(-3)
A 		2.2
(-3)
A 		10.9
(3)
A 		9
avr 10.4
(3) 		4.5
(-0.9) 		1.4
(-3) 		7.8
(1.3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 9.6
(2.6)
A 		10.2
(3)
A 		1.3
(-2.8)
A 		1
(-3)
A 		2
(-2.3)
A 		4
(-1)
A 		9
B 1.9
(-2.1)
A 		7.9
(1.5)
A 		10.4
(3)
A 		0.5
(-2.9)
A 		0.4
(-3)
A 		9.1
(2.2)
A 		10
C 1.8
(-2.3)
A 		2.3
(-2)
A 		4.8
(-0.4)
A 		10.2
(3)
A 		2.4
(-1.9)
A 		0.7
(-3)
A 		10
avr 4.4
(0.2) 		6.8
(3) 		5.5
(1.5) 		3.9
(-0.3) 		1.6
(-3) 		4.6
(0.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182326_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.145
Sequence Type Exemplar sequence
Representative Public ID K09H9.1 NCBI
Target Description K09H9.1 /REP_DB=WormBase Gene ID /WP=CE18036 /TR=O44994 /GB=AAB97574.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058710(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058710 NCBI Caenorhabditis elegans K09H9.1 (K09H9.1) mRNA, complete cds. 11/11 None
SNAP00000035327 ENSEMBL cdna:SNAP chromosome:CEL140:I:3154805:3155569:1 11/11 None
K09H9.1 ENSEMBL cdna:known chromosome:CEL140:I:3152836:3155569:1 gene:K09H9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3152378-3155569(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09H9.1
Entrez Gene 187238 Entrez gene
SwissProt O44994 EMBL-EBI
WormBase CE36701 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491111 K09H9.1 [Caenorhabditis elegans] gb|AAB97574.2| Hypothetical protein K09H9.1 [Caenorhabditis elegans] 0.0
blast NP_491111 K09H9.1 [Caenorhabditis elegans] gb|AAB97574.2| Hypothetical protein K09H9.1 [Caenorhabditis elegans] 1.0E-126
blast AAF60766 Hypothetical protein Y54E10A.12 [Caenorhabditis elegans] ref|NP_491120.1| Y54E10A.12 [Caenorhabditis elegans] 4.0E-35
blast CAD91711 Hypothetical protein Y48A6C.5b [Caenorhabditis elegans] ref|NP_001022891.1| defective PHArynx development family member (pha-1) [Caenorhabditis elegans] 2.0E-19
blast CAA21655 Hypothetical protein Y48A6C.5a [Caenorhabditis elegans] ref|NP_001022890.1| defective PHArynx development family member (pha-1) [Caenorhabditis elegans] emb|CAA52066.1| pha1 [Caenorhabditis elegans] emb|CAA52299.1| pha-1 [Caenorhabditis elegans] 2.0E-19
blast CAB70103 Hypothetical protein Y53F4B.8 [Caenorhabditis elegans] ref|NP_497093.1| Y53F4B.8 [Caenorhabditis elegans] 3.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR009497 EMBL-EBI Protein of unknown function DUF1114 1.2E-42
Pfam IPR009497 EMBL-EBI Protein of unknown function DUF1114 2.2E-32
Sequence
Target Sequence 
>C. ELEGANS:182326_AT
tagatttgacgttcttccttcaactcaaccgcagtcaatgtatatattggaagaggtaca
aataaacgttcaattcgcgaaaactcttatagatgaattggacaaagatgaatcactttt
tgataactttatcgctaactcccagagaatttttccaactaaaagagtaactgttgaatt
tccaatgaaatatattcaactctccattggaaatttggaaaagcttatcaaaaagtgtat
gaaaatggtttcaaaagaacctcaaagaaacacaacaacgatattccggatgcaccttca
agatgctaacttctctcaatctgttaaccgtgtcttcaacattattctctgtgacgaaat
tcccgagatatttcattcctctgaaaattgcaaaagcgatgatacatccgattgttggca
tcttgaaactattcaaccaattcctgagcagaaagcaaatcaattttatggggacgacac
gatcttaacaggaaaatgtttttgtttgaaaaacctgcggctaaatagttgtatcaacta
tcagcttttattcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGATTTGACGTTCTTCCTTCAACT 63 653 849 Antisense
CCTTCAACTCAACCGCAGTCAATGT 575 269 865 Antisense
TGATAACTTTATCGCTAACTCCCAG 639 563 969 Antisense
AACGATATTCCGGATGCACCTTCAA 221 145 1125 Antisense
ACCTTCAAGATGCTAACTTCTCTCA 275 87 1142 Antisense
ACTTCTCTCAATCTGTTAACCGTGT 531 101 1157 Antisense
AACCGTGTCTTCAACATTATTCTCT 433 147 1174 Antisense
TTCCCGAGATATTTCATTCCTCTGA 605 697 1208 Antisense
GATACATCCGATTGTTGGCATCTTG 7 425 1249 Antisense
TGGGGACGACACGATCTTAACAGGA 323 551 1317 Antisense
GTATCAACTATCAGCTTTTATTCGA 7 455 1379 Antisense
Sequence Source Affymetrix Proprietary Database