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[182325_at]

Description T04A6.2 /REP_DB=WormBase Gene ID /WP=CE00758 /TR=Q22131 /GB=AAA50673.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 01      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 36.3
(-2.1)
A 		10.8
(-3)
A 		38.9
(-2)
A 		172.9
(3)
A 		162
B 45.2
(-0.4)
A 		11.3
(-3)
A 		54.9
(0.4)
A 		88.8
(3)
A 		78
C 23.8
(-2.2)
A 		42.8
(-1.1)
A 		10.1
(-3)
A 		112.5
(3)
A 		102
avr 35.1
(-2.2) 		21.6
(-3) 		34.6
(-2.2) 		124.7
(3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 34.1
(0.7)
A 		30.8
(0.2)
A 		41.6
(1.9)
A 		10.3
(-3)
A 		48.9
(3)
A 		48.1
(2.9)
A 		39
B 12.4
(-3)
A 		51.3
(2.3)
A 		46.6
(1.7)
A 		56.1
(3)
A 		39.2
(0.7)
A 		54.9
(2.8)
A 		44
C 33.3
(-1)
A 		30.6
(-1.4)
A 		64.1
(2.7)
A 		57.2
(1.9)
A 		66.3
(3)
A 		17.2
(-3)
A 		49
avr 26.6
(-3) 		37.6
(-0.3) 		50.8
(2.8) 		41.2
(0.5) 		51.5
(3) 		40.1
(0.3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 13.2
(-0.2)
A 		2.3
(-3)
A 		10.2
(-0.9)
A 		25.3
(3)
A 		23
B 14.4
(1.3)
A 		2.8
(-3)
A 		12.7
(0.7)
A 		18.9
(3)
A 		16
C 7.9
(-1.3)
A 		12.3
(0.4)
A 		3.5
(-3)
A 		19
(3)
A 		16
avr 11.8
(-0.6) 		5.8
(-3) 		8.8
(-1.8) 		21.1
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 6.3
(-1.2)
A 		10.9
(1.1)
A 		9.1
(0.2)
A 		2.6
(-3)
A 		14.7
(3)
A 		11.7
(1.5)
A 		12
B 4.3
(-3)
A 		17.1
(1.7)
A 		11.3
(-0.4)
A 		14.9
(0.9)
A 		15.9
(1.3)
A 		20.5
(3)
A 		16
C 12.4
(-0.5)
A 		9.3
(-1.7)
A 		16.3
(1)
A 		11.5
(-0.8)
A 		21.4
(3)
A 		5.8
(-3)
A 		16
avr 7.7
(-3) 		12.4
(-0.1) 		12.2
(-0.2) 		9.7
(-1.8) 		17.3
(3) 		12.7
(0.1) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182325_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7610
Sequence Type Exemplar sequence
Representative Public ID T04A6.2 NCBI
Target Description T04A6.2 /REP_DB=WormBase Gene ID /WP=CE00758 /TR=Q22131 /GB=AAA50673.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066267(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066267 NCBI Caenorhabditis elegans T04A6.2 (T04A6.2) mRNA, complete cds. 11/11 None
GENEFINDER00000004882 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7612487:7615550:1 11/11 None
SNAP00000004874 ENSEMBL cdna:SNAP chromosome:CEL140:III:7614830:7615550:1 11/11 None
T04A6.2 ENSEMBL cdna:known chromosome:CEL140:III:7614785:7615550:1 gene:T04A6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7614782-7615548(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T04A6.2
Entrez Gene 188036 Entrez gene
SwissProt Q22131 EMBL-EBI
WormBase CE00758 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA50673 Hypothetical protein T04A6.2 [Caenorhabditis elegans] ref|NP_498668.1| T04A6.2 [Caenorhabditis elegans] 2.0E-84
blast AAA50673 Hypothetical protein T04A6.2 [Caenorhabditis elegans] ref|NP_498668.1| T04A6.2 [Caenorhabditis elegans] 7.0E-84
blast AAA50673 Hypothetical protein T04A6.2 [Caenorhabditis elegans] ref|NP_498668.1| T04A6.2 [Caenorhabditis elegans] 5.0E-76
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498668.1 2 42-64,98-120
T04A6.2 2 42-64,98-120
GENEFINDER00000004882 4 7-29,62-84,165-187,221-243
SNAP00000004874 2 27-49,83-105
Sequence
Target Sequence 
>C. ELEGANS:182325_AT
tctggccaataaacttcaaccgcgaggaataccgaattgtaactcaaaaaccattcagac
gcaacagaaatccaatatctttgattactcacctcgttctggctttaaccatcactggac
tccaacttcactacgaactgttccaaggtggtgagctgaaggaactcgctttcattttta
tgacaactggcaatgctatttcatttctttctggcagtgtcagaggatttgatatgattc
ttttgattgaattattaactgctgctgcaaccgcctatatctacgacatgaccctgtact
acccagtcattatgcttatgatggcacaaacctacatacgattggaaaataccatcgagc
ttccggagattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGGCCAATAAACTTCAACCGCGA 575 607 62 Antisense
ATATCTTTGATTACTCACCTCGTTC 180 21 136 Antisense
CTCGTTCTGGCTTTAACCATCACTG 65 231 154 Antisense
TAACCATCACTGGACTCCAACTTCA 516 637 167 Antisense
TCCAACTTCACTACGAACTGTTCCA 81 589 182 Antisense
GAAGGAACTCGCTTTCATTTTTATG 698 333 219 Antisense
ATTTCATTTCTTTCTGGCAGTGTCA 483 15 259 Antisense
AATTATTAACTGCTGCTGCAACCGC 85 175 311 Antisense
CAACCGCCTATATCTACGACATGAC 439 187 329 Antisense
TGACCCTGTACTACCCAGTCATTAT 343 569 350 Antisense
AATACCATCGAGCTTCCGGAGATTG 632 169 409 Antisense
Sequence Source Affymetrix Proprietary Database