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[182324_at]

Description Y46G5A.8 /REP_DB=WormBase Gene ID /WP=CE24305 /TR=Q9U2F8 /GB=CAB60353.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 52.3
(-1.7)
A 		47.9
(-2.4)
A 		44.8
(-3)
A 		78.6
(3)
A 		34
B 58.2
(-0)
A 		39.4
(-3)
A 		77.4
(3)
A 		44
(-2.3)
M 		38
C 70.1
(3)
A 		67
(1.8)
A 		54
(-3)
A 		55.1
(-2.6)
A 		16
avr 60.2
(3) 		51.4
(-3) 		58.7
(2) 		59.2
(2.3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 74.8
(1.8)
A 		61.3
(0.6)
A 		74.1
(1.8)
A 		21.6
(-3)
A 		57.6
(0.3)
A 		87.5
(3)
P 		66
B 70.7
(1.3)
P 		68.8
(1.1)
A 		67.9
(1)
A 		31.5
(-3)
A 		37.3
(-2.4)
A 		86
(3)
P 		55
C 77.5
(0.6)
A 		44.6
(-3)
A 		77.3
(0.6)
A 		69.6
(-0.3)
A 		46.9
(-2.7)
A 		99.2
(3)
P 		55
avr 74.3
(1) 		58.2
(-0.9) 		73.1
(0.9) 		40.9
(-3) 		47.3
(-2.2) 		90.9
(3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 19.1
(3)
A 		10.4
(-3)
A 		11.7
(-2.1)
A 		11.5
(-2.2)
A 		9
B 18.6
(3)
A 		9.7
(-2.8)
A 		17.9
(2.5)
A 		9.4
(-3)
M 		9
C 23.2
(3)
A 		19.3
(1.3)
A 		18.8
(1.1)
A 		9.3
(-3)
A 		14
avr 20.3
(3) 		13.1
(-1.2) 		16.1
(0.5) 		10.1
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 13.8
(0.1)
A 		21.8
(3)
A 		16.1
(0.9)
A 		5.5
(-3)
A 		17.4
(1.4)
A 		21.3
(2.8)
P 		16
B 24.6
(1.1)
P 		22.9
(0.7)
A 		16.5
(-0.9)
A 		8.3
(-3)
A 		15.1
(-1.3)
A 		32.1
(3)
P 		24
C 28.7
(1.6)
A 		13.6
(-3)
A 		19.7
(-1.1)
A 		14
(-2.9)
A 		15.2
(-2.5)
A 		33.2
(3)
P 		20
avr 22.4
(1) 		19.4
(0.1) 		17.4
(-0.5) 		9.3
(-3) 		15.9
(-1) 		28.9
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182324_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2834
Sequence Type Exemplar sequence
Representative Public ID Y46G5A.8 NCBI
Target Description Y46G5A.8 /REP_DB=WormBase Gene ID /WP=CE24305 /TR=Q9U2F8 /GB=CAB60353.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064313(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064313 NCBI Caenorhabditis elegans Y46G5A.8 (Y46G5A.8) mRNA, complete cds. 11/11 None
SNAP00000038991 ENSEMBL cdna:SNAP chromosome:CEL140:II:12756249:12767045:1 10/11 None
GENEFINDER00000039021 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12756249:12767045:1 10/11 None
Y46G5A.8 ENSEMBL cdna:known chromosome:CEL140:II:12756249:12757531:1 gene:Y46G5A.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12756245-12757528(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46G5A.8
Entrez Gene 174905 Entrez gene
SwissProt Q9U2F8 EMBL-EBI
WormBase CE24305 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60376 Hypothetical protein Y46G5A.10 [Caenorhabditis elegans] ref|NP_496715.3| Y46G5A.10 [Caenorhabditis elegans] 0.0
blast CAE63448 Hypothetical protein CBG07907 [Caenorhabditis briggsae] 1.0E-84
blast CAB60353 Hypothetical protein Y46G5A.8 [Caenorhabditis elegans] ref|NP_496714.1| Y46G5A.8 [Caenorhabditis elegans] 2.0E-83
blast CAB60353 Hypothetical protein Y46G5A.8 [Caenorhabditis elegans] ref|NP_496714.1| Y46G5A.8 [Caenorhabditis elegans] 5.0E-81
blast CAE63448 Hypothetical protein CBG07907 [Caenorhabditis briggsae] 8.0E-81
blast CAB60353 Hypothetical protein Y46G5A.8 [Caenorhabditis elegans] ref|NP_496714.1| Y46G5A.8 [Caenorhabditis elegans] 2.0E-78
blast CAB60352 Hypothetical protein Y46G5A.7 [Caenorhabditis elegans] ref|NP_496713.2| Y46G5A.7 [Caenorhabditis elegans] 2.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.8E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496714.1 2 146-168,172-191
Y46G5A.8 2 146-168,172-191
Sequence
Target Sequence 
>C. ELEGANS:182324_AT
aacttccactggttgctatttctgaagttctggatcacatggataccggggatatatgtg
cactccgagtaacatctcaaaaaacgaagaacctcgtccagcagtctgcaagacgcttca
cagaccgtcccaagcatttgtgccagcttgatataattgcacgtcgagaccattttattc
tcggctctcgaattggatttgatcgttgtacggaattatataaaggaagagatattgata
gactattgggaacaaccagtgacctcctggataatctacatgttgagcacgttaatctgg
atataagacgtcgagatgaagaagtggagattcacaaaattgtcacaatgctcctgagaa
aaaaggccaatgtgttcaaaactcagagatatgaacagttttgtgaatttttgtatgcat
tattcggtttttatattttctcatctcttttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTTCCACTGGTTGCTATTTCTGA 420 139 50 Antisense
GGATACCGGGGATATATGTGCACTC 495 509 90 Antisense
GTGCACTCCGAGTAACATCTCAAAA 466 481 107 Antisense
ACCTCGTCCAGCAGTCTGCAAGACG 131 89 140 Antisense
CTGCAAGACGCTTCACAGACCGTCC 607 225 155 Antisense
CACAGACCGTCCCAAGCATTTGTGC 603 193 168 Antisense
GCCAGCTTGATATAATTGCACGTCG 314 279 191 Antisense
GTCGAGACCATTTTATTCTCGGCTC 110 475 212 Antisense
ATTGGGAACAACCAGTGACCTCCTG 114 3 294 Antisense
TGACCTCCTGGATAATCTACATGTT 536 569 309 Antisense
TTTTATATTTTCTCATCTCTTTTCC 616 675 478 Antisense
Sequence Source Affymetrix Proprietary Database