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[182323_at]

Description C02H6.2 /REP_DB=WormBase Gene ID /WP=CE07858 /TR=O17054 /GB=AAB70309.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 82      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 81      6grp_total > 70      4grp_total > 60      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 204.9
(-0.9)
P 		262.8
(3)
P 		218.6
(0)
P 		173
(-3)
P 		90
B 312.8
(3)
P 		265.3
(-0)
P 		248.8
(-1.1)
P 		218.3
(-3)
P 		95
C 200.7
(-2.4)
P 		191
(-3)
P 		281.4
(3)
P 		239.4
(0.2)
P 		90
avr 239.5
(1.5) 		239.7
(1.5) 		249.6
(3) 		210.2
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 335.9
(1.1)
P 		219
(-3)
P 		291.5
(-0.5)
P 		390.8
(3)
P 		262.5
(-1.5)
P 		254.9
(-1.7)
P 		172
B 242
(-2.6)
P 		232
(-3)
P 		276.3
(-1.4)
P 		403
(3)
P 		261.7
(-2)
P 		260.4
(-2)
P 		171
C 249.7
(-2.7)
P 		238
(-3)
P 		252.1
(-2.6)
P 		445.3
(3)
P 		254.5
(-2.5)
P 		239.6
(-3)
P 		207
avr 275.9
(-1.5) 		229.7
(-3) 		273.3
(-1.6) 		413
(3) 		259.6
(-2) 		251.6
(-2.3) 		183
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 74.6
(3)
P 		57
(0.9)
P 		57.1
(0.9)
P 		25.3
(-3)
P 		49
B 99.7
(3)
P 		65.5
(-0.9)
P 		57.7
(-1.7)
P 		46.5
(-3)
P 		53
C 66.4
(-0.3)
P 		54.9
(-1.5)
P 		98.1
(3)
P 		40.4
(-3)
P 		58
avr 80.2
(3) 		59.1
(0) 		71
(1.7) 		37.4
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 61.9
(-3)
P 		77.9
(-0.4)
P 		63.5
(-2.7)
P 		99.1
(3)
P 		79.2
(-0.2)
P 		62.1
(-3)
P 		37
B 84.2
(-0.4)
P 		77.2
(-1.5)
P 		67.1
(-3)
P 		106.7
(3)
P 		106.3
(2.9)
P 		97.1
(1.5)
P 		40
C 92.5
(3)
P 		72.6
(-1.2)
P 		64.2
(-3)
P 		89.6
(2.4)
P 		82.3
(0.8)
P 		80.2
(0.4)
P 		28
avr 79.5
(-0.4) 		75.9
(-1) 		64.9
(-3) 		98.5
(3) 		89.3
(1.4) 		79.8
(-0.3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182323_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12227
Sequence Type Exemplar sequence
Representative Public ID C02H6.2 NCBI
Target Description C02H6.2 /REP_DB=WormBase Gene ID /WP=CE07858 /TR=O17054 /GB=AAB70309.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072491(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072491 NCBI Caenorhabditis elegans C02H6.2 (C02H6.2) mRNA, complete cds. 11/11 None
C02H6.2 ENSEMBL cdna:known chromosome:CEL140:V:7393165:7394617:-1 gene:C02H6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7393165-7394618(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C02H6.2
Entrez Gene 179126 Entrez gene
SwissProt O17054 EMBL-EBI
WormBase CE07858 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70309 Hypothetical protein C02H6.2 [Caenorhabditis elegans] ref|NP_504892.1| C02H6.2 [Caenorhabditis elegans] 0.0
blast CAB63437 Hypothetical protein C38D9.6 [Caenorhabditis elegans] ref|NP_507448.1| C38D9.6 [Caenorhabditis elegans] 1.0E-37
blast CAB07208 Hypothetical protein F47H4.9 [Caenorhabditis elegans] ref|NP_507392.1| F47H4.9 [Caenorhabditis elegans] 2.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.3E-48
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.1E-11
Sequence
Target Sequence 
>C. ELEGANS:182323_AT
aaacgaactctacatatgcttgctgtctggaggtcggactcgtttaaattcgttgcaaga
tatcgaaaacatactgcagacaatgaagcctcttcccgtaaaacatattcatctacttgg
atatcttttctccgaacttccagtagtttttcaacattttcaacctggagttcttgaaaa
tattcgactgcattcgtatcaggtgacagatgatttgaccgacctcgtgacgacatcgga
gcagtggaataaagcaaaatctcttgaaattactggatactgtactttgccaaaagagat
ggaaaatttatttcattttgaacacttccaactgttgctaacgcaattttcgaaaacgga
cgccagcaatgtcaaaaaagccctcaggaaaccatctaaatttgtatcaggaactttcga
aattttcatttacaatcctgcagaagtcgcgagtgtttttgatcctcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACGAACTCTACATATGCTTGCTG 58 127 453 Antisense
ATGCTTGCTGTCTGGAGGTCGGACT 32 39 468 Antisense
GTCGGACTCGTTTAAATTCGTTGCA 547 379 485 Antisense
GAAGCCTCTTCCCGTAAAACATATT 533 343 537 Antisense
TTGGATATCTTTTCTCCGAACTTCC 27 697 569 Antisense
ATTCGACTGCATTCGTATCAGGTGA 615 9 634 Antisense
GTGACAGATGATTTGACCGACCTCG 30 481 655 Antisense
GACCTCGTGACGACATCGGAGCAGT 85 381 673 Antisense
AAAGCCCTCAGGAAACCATCTAAAT 215 125 829 Antisense
TACAATCCTGCAGAAGTCGCGAGTG 648 641 883 Antisense
GTCGCGAGTGTTTTTGATCCTCAAT 563 475 898 Antisense
Sequence Source Affymetrix Proprietary Database