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[182322_at]

Description Y43C5A.4 /REP_DB=WormBase Gene ID /WP=CE19153 /TR=Q9XXF0 /GB=CAA19504.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 2.2
(-3)
A 		6.4
(-1.1)
A 		9
(0)
A 		15.6
(3)
A 		13
B 2.4
(-3)
A 		8.1
(1)
A 		11
(3)
A 		5
(-1.2)
A 		9
C 6.2
(-3)
A 		28.5
(3)
A 		6.2
(-3)
A 		23.4
(1.6)
A 		22
avr 3.6
(-3) 		14.3
(2.8) 		8.7
(-0.2) 		14.7
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 7.9
(-2.4)
A 		8.7
(-2.2)
A 		10.1
(-1.9)
A 		5.1
(-3)
A 		14.1
(-1)
A 		31.5
(3)
A 		26
B 4.7
(-3)
A 		12.1
(-1.8)
A 		6.9
(-2.6)
A 		7.7
(-2.5)
A 		7.7
(-2.5)
A 		42
(3)
A 		37
C 6.9
(-2.3)
A 		31.5
(3)
A 		11.9
(-1.2)
A 		3.7
(-3)
A 		12.2
(-1.2)
A 		24.8
(1.6)
A 		28
avr 6.5
(-2.8) 		17.4
(-0.4) 		9.6
(-2.1) 		5.5
(-3) 		11.3
(-1.7) 		32.8
(3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.8
(-3)
A 		1.4
(-0.8)
A 		2.4
(3)
A 		2.3
(2.6)
A 		2
B 0.8
(-3)
A 		2
(1.2)
A 		2.5
(3)
A 		1.1
(-1.9)
A 		2
C 2.1
(-3)
A 		8.2
(3)
A 		2.2
(-2.9)
A 		3.9
(-1.2)
A 		6
avr 1.2
(-3) 		3.9
(3) 		2.4
(-0.3) 		2.4
(-0.3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.4
(-2.9)
A 		3.1
(-1.3)
A 		2.2
(-2.2)
A 		1.3
(-3)
A 		4.3
(-0.2)
A 		7.7
(3)
A 		6
B 1.6
(-3)
A 		4
(-2)
A 		1.7
(-3)
A 		2
(-2.8)
A 		3.1
(-2.4)
A 		15.7
(3)
A 		14
C 2.5
(-1.8)
A 		9.6
(3)
A 		3
(-1.4)
A 		0.7
(-3)
A 		3.9
(-0.8)
A 		8.3
(2.1)
A 		9
avr 1.8
(-2.7) 		5.6
(-0.2) 		2.3
(-2.4) 		1.3
(-3) 		3.8
(-1.4) 		10.6
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182322_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10286
Sequence Type Exemplar sequence
Representative Public ID Y43C5A.4 NCBI
Target Description Y43C5A.4 /REP_DB=WormBase Gene ID /WP=CE19153 /TR=Q9XXF0 /GB=CAA19504.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069484(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069484 NCBI Caenorhabditis elegans Y43C5A.4 (Y43C5A.4) mRNA, complete cds. 11/11 None
SNAP00000044403 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10278787:10279441:1 11/11 None
GENEFINDER00000044411 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10277994:10279441:1 11/11 None
Y43C5A.4 ENSEMBL cdna:known chromosome:CEL140:IV:10277994:10279441:1 gene:Y43C5A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10277999-10279447(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43C5A.4
Entrez Gene 177912 Entrez gene
SwissProt Q9XXF0 EMBL-EBI
WormBase CE19153 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19504 Hypothetical protein Y43C5A.4 [Caenorhabditis elegans] ref|NP_501885.1| Y43C5A.4 [Caenorhabditis elegans] 5.0E-71
blast CAA19504 Hypothetical protein Y43C5A.4 [Caenorhabditis elegans] ref|NP_501885.1| Y43C5A.4 [Caenorhabditis elegans] 5.0E-55
blast CAE60729 Hypothetical protein CBG04407 [Caenorhabditis briggsae] 3.0E-20
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501885.1 1 15-37
Y43C5A.4 1 15-37
GENEFINDER00000044411 1 15-37
Sequence
Target Sequence 
>C. ELEGANS:182322_AT
gaagagacccacggcaaaatccaaaaaatccaaaaaagctactggctccaagaagaagaa
taagaaaacgaaaaaacccgatggtagtgaaaaaaaaacacagacgcaaactgaagatca
gaaagctcctgattcaccgaaaaaagatgatttcttcgctcctcctggagctccagatcc
agttccagctgtgccagttgaaccaagtccagctccacctgtaccagctgttccagcggc
agttgaacaagaatggaaaccaccaccagaatttgagcgaccgaagcatcctggatttga
agcacagctggaaccgaatgaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAGACCCACGGCAAAATCCAAA 535 337 291 Antisense
AATCCAAAAAAGCTACTGGCTCCAA 241 161 317 Antisense
CAGAAAGCTCCTGATTCACCGAAAA 221 203 409 Antisense
AAAAAGATGATTTCTTCGCTCCTCC 603 129 431 Antisense
CTGGAGCTCCAGATCCAGTTCCAGC 364 241 455 Antisense
CAGCTGTGCCAGTTGAACCAAGTCC 268 203 476 Antisense
TACCAGCTGTTCCAGCGGCAGTTGA 14 651 512 Antisense
AACCACCACCAGAATTTGAGCGACC 690 147 548 Antisense
TTTGAGCGACCGAAGCATCCTGGAT 135 667 562 Antisense
GCATCCTGGATTTGAAGCACAGCTG 92 311 576 Antisense
GAAGCACAGCTGGAACCGAATGAAG 93 341 589 Antisense
Sequence Source Affymetrix Proprietary Database