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[182321_at] 7TM chemoreceptor, srab family

Description C36C5.8 /REP_DB=WormBase Gene ID /WP=CE08597 /TR=O16401 /GB=AAB65931.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 30      6grp_cgc > 38      6grp_cgc_sub > Da      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 5.2
(-1.9)
A 		9.4
(0.1)
A 		3
(-3)
A 		15.2
(3)
A 		12
B 5.9
(1.4)
A 		4.7
(-1.7)
A 		4.2
(-3)
A 		6.5
(3)
A 		2
C 35.5
(3)
A 		6.7
(-2.1)
A 		1.5
(-3)
A 		18.5
(0)
A 		34
avr 15.5
(3) 		6.9
(-1.1) 		2.9
(-3) 		13.4
(2) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 7.7
(0.7)
A 		5.7
(-0.5)
A 		1.3
(-3)
A 		5.7
(-0.5)
A 		2
(-2.6)
A 		11.8
(3)
A 		11
B 18.9
(3)
A 		2.3
(-2.8)
A 		11.6
(0.4)
A 		1.8
(-3)
A 		2.2
(-2.9)
A 		13.9
(1.2)
A 		17
C 1.9
(-3)
A 		4.1
(-2.4)
A 		6.9
(-1.6)
A 		4.3
(-2.3)
A 		3.8
(-2.5)
A 		23.7
(3)
A 		22
avr 9.5
(-0) 		4
(-2.4) 		6.6
(-1.3) 		3.9
(-2.5) 		2.7
(-3) 		16.5
(3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.9
(1.7)
A 		2
(2.1)
A 		0.8
(-3)
A 		2.2
(3)
A 		1
B 1.9
(3)
A 		1.2
(-1.7)
A 		1
(-3)
A 		1.4
(-0.3)
A 		1
C 11.8
(3)
A 		1.9
(-2.3)
A 		0.5
(-3)
A 		3.1
(-1.6)
A 		11
avr 5.2
(3) 		1.7
(-1.8) 		0.8
(-3) 		2.2
(-1.1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.4
(-0.5)
A 		2
(0.9)
A 		0.3
(-3)
A 		1.4
(-0.5)
A 		0.6
(-2.3)
A 		2.9
(3)
A 		3
B 6.6
(3)
A 		0.8
(-2.7)
A 		2.8
(-0.7)
A 		0.5
(-3)
A 		0.9
(-2.6)
A 		5.2
(1.6)
A 		6
C 0.7
(-3)
A 		1.3
(-2.5)
A 		1.7
(-2.2)
A 		0.9
(-2.8)
A 		1.2
(-2.6)
A 		7.9
(3)
A 		7
avr 2.9
(-0.3) 		1.4
(-2.3) 		1.6
(-2) 		0.9
(-3) 		0.9
(-3) 		5.3
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182321_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15173
Sequence Type Exemplar sequence
Representative Public ID C36C5.8 NCBI
Target Description C36C5.8 /REP_DB=WormBase Gene ID /WP=CE08597 /TR=O16401 /GB=AAB65931.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071463(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071463 NCBI Caenorhabditis elegans Serpentine Receptor, class AB (class A-like) family member (srab-11) (srab-11) mRNA, complete cds. 11/11 None
GENEFINDER00000036671 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3144962:3151789:-1 11/11 None
C36C5.8 ENSEMBL cdna:known chromosome:CEL140:V:3145030:3146733:-1 gene:C36C5.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3145029-3146733(-) 96.26 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srab family
Gene Symbol srab-11
Ensembl C36C5.8
Entrez Gene 183264 Entrez gene
SwissProt Q8ITZ5 EMBL-EBI
WormBase CE08597 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503864 Serpentine Receptor, class AB (class A-like) family member (srab-11) [Caenorhabditis elegans] gb|AAN73878.1| Serpentine receptor, class ab (class a-like) protein 11 [Caenorhabditis elegans] 1.0E-179
blast NP_503866 Serpentine Receptor, class AB (class A-like) family member (srab-6) [Caenorhabditis elegans] gb|AAB65932.1| Serpentine receptor, class ab (class a-like) protein 6 [Caenorhabditis elegans] 1.0E-170
blast NP_503864 Serpentine Receptor, class AB (class A-like) family member (srab-11) [Caenorhabditis elegans] gb|AAN73878.1| Serpentine receptor, class ab (class a-like) protein 11 [Caenorhabditis elegans] 1.0E-135
blast NP_503862 Serpentine Receptor, class AB (class A-like) family member (srab-9) [Caenorhabditis elegans] gb|AAN73876.2| Serpentine receptor, class ab (class a-like) protein 9 [Caenorhabditis elegans] pir||E88989 protein C36C5.6 [imported] - Caenorhabditis elegans 1.0E-120
blast NP_503862 Serpentine Receptor, class AB (class A-like) family member (srab-9) [Caenorhabditis elegans] gb|AAN73876.2| Serpentine receptor, class ab (class a-like) protein 9 [Caenorhabditis elegans] pir||E88989 protein C36C5.6 [imported] - Caenorhabditis elegans 1.0E-110
blast NP_503867 Serpentine Receptor, class AB (class A-like) family member (srab-7) [Caenorhabditis elegans] gb|AAB65933.1| Serpentine receptor, class ab (class a-like) protein 7 [Caenorhabditis elegans] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 8.8E-36
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503864.1 7 15-37,50-72,92-114,134-156,178-200,233-255,265-287
C36C5.8 7 15-37,50-72,92-114,134-156,178-200,233-255,265-287
GENEFINDER00000036671 13 24-46,53-75,107-129,142-164,191-210,243-265,275-297,356-378,393-412,553-575,595-617,654-676,686-708
Sequence
Target Sequence 
>C. ELEGANS:182321_AT
tgaatattccggatgtacacttgggatatgtgtgacaatgctacagatattgttagcctc
ggtttttacgttttattccttcatgaacttttcatttgcaacacccgtaatgacttactg
catggctgtaaagattggaatgttcagtaatgtcgagataatatttgctataagtcttac
tgttcaaattattagccgaatactattccaatacctgtttcaggtgaatcaaaatctccg
attaaaacaattagccagttcactatcaaataggttttcgttggagcagaatatgacatc
gatgagaatactgaaaacgtttgccaatttacaagcaggttttatgattattcatatggc
aatgttcttgtatattctcccggctggtgcaggaatggagaaatccacgtatatatcgct
agtggaaatgagctcatcgttccccttatatgccgtggtttctatcctgatacttgtgag
gaaagatcgtctgaacaaagtcaagctgaagcactctttgaacacacatgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAATATTCCGGATGTACACTTGGG 202 577 393 Antisense
GATATTGTTAGCCTCGGTTTTTACG 49 427 438 Antisense
GAACTTTTCATTTGCAACACCCGTA 640 349 477 Antisense
GCAACACCCGTAATGACTTACTGCA 322 317 490 Antisense
GAATACTATTCCAATACCTGTTTCA 202 327 590 Antisense
ACAATTAGCCAGTTCACTATCAAAT 692 113 639 Antisense
GGCAATGTTCTTGTATATTCTCCCG 266 535 750 Antisense
TTCTCCCGGCTGGTGCAGGAATGGA 416 693 767 Antisense
GAGAAATCCACGTATATATCGCTAG 387 393 790 Antisense
TTATATGCCGTGGTTTCTATCCTGA 631 677 838 Antisense
GAAGCACTCTTTGAACACACATGTA 221 341 900 Antisense
Sequence Source Affymetrix Proprietary Database