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[182320_at]

Description F18G5.2 /REP_DB=WormBase Gene ID /WP=CE04410 /TR=Q19573 /GB=AAA81082.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 17      6grp_cgc > 89      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 8.6
(-3)
A 		10.2
(-2.8)
A 		17.2
(-2.2)
A 		70
(3)
A 		61
B 6.7
(-3)
A 		15.5
(3)
A 		12.3
(0.8)
A 		9.4
(-1.2)
A 		9
C 4.8
(-3)
A 		30.7
(3)
A 		15.3
(-0.6)
A 		25.4
(1.8)
A 		26
avr 6.7
(-3) 		18.8
(-0.4) 		14.9
(-1.3) 		34.9
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 420
1 2 3 4 5 6 range
A 34.9
(-2.5)
A 		7.4
(-3)
A 		6
(-3)
A 		95.6
(-1.6)
A 		382
(3)
P 		272.3
(1.2)
P 		376
B 6.1
(-3)
A 		6.2
(-3)
A 		7.7
(-3)
A 		116.6
(-1.4)
A 		412.7
(3)
P 		268
(0.9)
P 		407
C 51.5
(-2.5)
A 		15.9
(-3)
A 		23.4
(-2.9)
A 		177.2
(-0.6)
A 		425.9
(3)
P 		302.1
(1.2)
P 		410
avr 30.8
(-2.7) 		9.8
(-3) 		12.4
(-3) 		129.8
(-1.2) 		406.9
(3) 		280.8
(1.1) 		397
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 3.1
(-2.3)
A 		2.2
(-3)
A 		4.5
(-1.3)
A 		10.2
(3)
A 		8
B 2.2
(-2.3)
A 		3.8
(3)
A 		2.8
(-0.3)
A 		2
(-3)
A 		2
C 1.6
(-3)
A 		8.8
(3)
A 		5.3
(0.1)
A 		4.3
(-0.8)
A 		7
avr 2.3
(-3) 		4.9
(1.9) 		4.2
(0.6) 		5.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 6.4
(-2.7)
A 		2.6
(-2.9)
A 		1.3
(-3)
A 		24.2
(-1.8)
A 		115.3
(3)
P 		66.3
(0.4)
P 		114
B 2.1
(-3)
A 		2.1
(-3)
A 		1.9
(-3)
A 		30.9
(-2)
A 		167.7
(3)
P 		99.9
(0.5)
P 		166
C 19.1
(-2.4)
A 		4.9
(-3)
A 		6
(-3)
A 		35.6
(-1.6)
A 		137.8
(3)
P 		101.1
(1.3)
P 		133
avr 9.2
(-2.7) 		3.2
(-3) 		3.1
(-3) 		30.2
(-1.8) 		140.3
(3) 		89.1
(0.8) 		137
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182320_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16203
Sequence Type Exemplar sequence
Representative Public ID F18G5.2 NCBI
Target Description F18G5.2 /REP_DB=WormBase Gene ID /WP=CE04410 /TR=Q19573 /GB=AAA81082.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077157(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077157 NCBI Caenorhabditis elegans Patterned Expression Site family member (pes-8) (pes-8) mRNA, complete cds. 11/11 None
GENEFINDER00000036142 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9249607:9255472:1 10/11 None
F18G5.2 ENSEMBL cdna:known chromosome:CEL140:X:9252784:9255647:1 gene:F18G5.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036137 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9252783-9255647(+) 98.36 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pes-8
Ensembl F18G5.2
Entrez Gene 191742 Entrez gene
SwissProt Q19573 EMBL-EBI
WormBase CE04410 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81082 Patterned expression site protein 8 [Caenorhabditis elegans] ref|NP_509558.1| Patterned Expression Site family member (pes-8) [Caenorhabditis elegans] 0.0
blast CAE69852 Hypothetical protein CBG16180 [Caenorhabditis briggsae] 1.0E-102
blast CAE69852 Hypothetical protein CBG16180 [Caenorhabditis briggsae] 1.0E-100
blast AAC04401 Hypothetical protein C17B7.7 [Caenorhabditis elegans] ref|NP_503922.1| C17B7.7 [Caenorhabditis elegans] 8.0E-13
blast CAE69853 Hypothetical protein CBG16181 [Caenorhabditis briggsae] 2.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509558.1 1 203-225
F18G5.2 1 203-225
GENEFINDER00000036142 1 359-381
Sequence
Target Sequence 
>C. ELEGANS:182320_AT
gctgtggttcttggtgctgatagtcttcaaagccaccaccaacagcatcaccagcacaac
caatactccagaaaccaagcagagtacgaccagggttctgtgatggctggaggaacgtat
tctctgagagaaggaatgatccacgagggttataccaggactcttccaagagagtcatac
tctactaacgaccgatatgccagtcgtgatcgtttcgaacgtcaaagccaggataagtac
acggatagatccagctacagaaattttgcctacgaacgggatatgggaagagttgaacca
atggacggatttgatgaggttgaaacccgtgaaagaacctattgtttgagcgatgatgat
caggaaattgtggagaaaaatgtcaagagaacccataccaccagatacgtaacagaatcg
cgagaatatgatcaggaccatgacaatgaagagcgaatgcgtggagacgagtatcatcac
gccacatacacacacagccttccaattccctatccctactttgcccatcattggcccgcc
atttttagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGTGGTTCTTGGTGCTGATAGTC 336 295 829 Antisense
TGATAGTCTTCAAAGCCACCACCAA 240 565 846 Antisense
CCAGCACAACCAATACTCCAGAAAC 176 273 879 Antisense
GTACGACCAGGGTTCTGTGATGGCT 666 457 912 Antisense
GAGGGTTATACCAGGACTCTTCCAA 349 401 973 Antisense
GTCATACTCTACTAACGACCGATAT 139 465 1002 Antisense
GATATGCCAGTCGTGATCGTTTCGA 540 425 1022 Antisense
ATCGTTTCGAACGTCAAAGCCAGGA 502 35 1037 Antisense
GATCCAGCTACAGAAATTTTGCCTA 37 417 1076 Antisense
GAACCCATACCACCAGATACGTAAC 271 345 1217 Antisense
CCATCATTGGCCCGCCATTTTTAGT 659 269 1353 Antisense
Sequence Source Affymetrix Proprietary Database