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[182319_s_at]

Description T21G5.4 /REP_DB=WormBase Gene ID /WP=CE13894 /TR=O02063 /GB=AAB52899.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 42      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 45.1
(-1.1)
A 		99
(3)
A 		54.5
(-0.4)
A 		20.8
(-3)
A 		78
B 19
(-3)
A 		20.9
(-2.6)
A 		48.1
(3)
A 		25.6
(-1.6)
A 		29
C 19.8
(-3)
A 		67
(3)
A 		40.2
(-0.4)
A 		49.8
(0.8)
A 		47
avr 28
(-3) 		62.3
(3) 		47.6
(0.4) 		32.1
(-2.3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 363
1 2 3 4 5 6 range
A 46.5
(-3)
A 		55.1
(-2.8)
A 		53.6
(-2.9)
A 		100.6
(-2)
A 		348.7
(2.6)
P 		368.5
(3)
P 		322
B 35.3
(-2.5)
A 		81.1
(-1.6)
A 		13.1
(-3)
A 		115.6
(-0.9)
A 		200.9
(0.8)
P 		307.7
(3)
P 		295
C 5.4
(-3)
A 		94.4
(-1.3)
A 		57.9
(-2)
A 		97.9
(-1.2)
A 		281.4
(2.4)
P 		312.8
(3)
P 		307
avr 29.1
(-3) 		76.9
(-2) 		41.5
(-2.8) 		104.7
(-1.5) 		277
(1.9) 		329.7
(3) 		301
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 16.4
(1.3)
A 		21.5
(3)
A 		14.3
(0.7)
A 		3
(-3)
A 		19
B 6.1
(-2.1)
A 		5.2
(-3)
A 		11.2
(3)
A 		5.4
(-2.8)
A 		6
C 6.6
(-3)
A 		19.3
(3)
A 		14
(0.5)
A 		8.4
(-2.1)
A 		13
avr 9.7
(-0.5) 		15.3
(3) 		13.2
(1.7) 		5.6
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 8.6
(-3)
A 		19.6
(-2.3)
A 		11.7
(-2.8)
A 		25.5
(-2)
A 		105.2
(3)
P 		89.7
(2)
P 		97
B 12.3
(-2.5)
A 		27
(-1.7)
A 		3.2
(-3)
A 		30.6
(-1.5)
A 		81.6
(1.2)
P 		114.7
(3)
P 		112
C 2
(-3)
A 		28.8
(-1.4)
A 		14.7
(-2.3)
A 		19.7
(-2)
A 		91.1
(2.2)
P 		104.7
(3)
P 		103
avr 7.6
(-3) 		25.1
(-1.9) 		9.9
(-2.9) 		25.3
(-1.9) 		92.6
(2.3) 		103
(3) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182319_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1556
Sequence Type Exemplar sequence
Representative Public ID T21G5.4 NCBI
Target Description T21G5.4 /REP_DB=WormBase Gene ID /WP=CE13894 /TR=O02063 /GB=AAB52899.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059564(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059564 NCBI Caenorhabditis elegans T21G5.4 (T21G5.4) mRNA, complete cds. 11/11 None
SNAP00000016511 ENSEMBL cdna:SNAP chromosome:CEL140:I:6880900:6881816:-1 11/11 None
GENEFINDER00000016516 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6880900:6881816:-1 11/11 None
T21G5.4 ENSEMBL cdna:known chromosome:CEL140:I:6880838:6881872:-1 gene:T21G5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6880830-6881747(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T21G5.4
Entrez Gene 172415 Entrez gene
SwissProt O02063 EMBL-EBI
WormBase CE13894 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52899 Hypothetical protein T21G5.4 [Caenorhabditis elegans] ref|NP_491965.1| T21G5.4 [Caenorhabditis elegans] 1.0E-155
blast CAA94569 Hypothetical protein C25G4.6 [Caenorhabditis elegans] ref|NP_502380.1| C25G4.6 [Caenorhabditis elegans] 1.0E-154
blast CAE66304 Hypothetical protein CBG11554 [Caenorhabditis briggsae] 1.0E-133
Sequence
Target Sequence 
>C. ELEGANS:182319_S_AT
gttggcaacccttgtctgggttcaaaatggaccaaaacttggtttgggaatcaagcattt
ccagaaccgtgtgcttgtttcacgtgttgatcctggatcactagccgagaagtgtcttgt
tcttggagatcatttgtgtgatgttgatggaattccagtcagtgacaaggatgttgccag
agatcttctcgtcaagaatatccaagagaaaggaaaagtcacttttgtcgtcgagcgccc
tgattcgatcgatgccaagcaatgggcgaaacaggcgttggctaccaatctcatgcaacc
accatcagtccaaatgaacgaagatgtgaaaggcattgcttcgcaatatcgtcaagctct
tccaggactgaagcctccagcgaagagtgcaatgtctaccggtccaaatgctcgccgtgt
ttctatcatcgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGCAACCCTTGTCTGGGTTCAA 136 437 342 Antisense
TTTCCAGAACCGTGTGCTTGTTTCA 100 669 399 Antisense
GATCCTGGATCACTAGCCGAGAAGT 215 417 430 Antisense
CGCCCTGATTCGATCGATGCCAAGC 100 257 577 Antisense
ATGGGCGAAACAGGCGTTGGCTACC 676 49 603 Antisense
TTGGCTACCAATCTCATGCAACCAC 28 709 619 Antisense
GCAACCACCATCAGTCCAAATGAAC 654 319 636 Antisense
CTTCGCAATATCGTCAAGCTCTTCC 176 217 680 Antisense
AGGACTGAAGCCTCCAGCGAAGAGT 474 55 705 Antisense
CAATGTCTACCGGTCCAAATGCTCG 213 183 731 Antisense
TGCTCGCCGTGTTTCTATCATCGAG 490 581 750 Antisense
Sequence Source Affymetrix Proprietary Database