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[182318_s_at] --- /// M. musculus T-cell activation protein TCA3

Description C36C9.1 /REP_DB=WormBase Gene ID /WP=CE19720 /TR=Q9TZK8 /GB=AAC67424.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 06      6grp_cgc > 58      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 49.8
(-1.3)
A 		32.8
(-2.2)
A 		19.3
(-3)
A 		124.5
(3)
P 		105
B 68.6
(0.9)
A 		9.7
(-3)
A 		54.6
(0)
A 		99.4
(3)
P 		90
C 61.4
(3)
A 		10.3
(-3)
A 		36.6
(0.1)
A 		61
(3)
P 		51
avr 59.9
(0.3) 		17.6
(-3) 		36.8
(-1.5) 		95
(3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 345
1 2 3 4 5 6 range
A 39.7
(-3)
A 		104.9
(-1.7)
A 		152
(-0.7)
P 		90.7
(-2)
A 		183.2
(-0.1)
P 		337.4
(3)
P 		298
B 96.3
(-3)
P 		125.9
(-2.4)
M 		114.1
(-2.6)
P 		133.2
(-2.2)
M 		211.2
(-0.6)
P 		381
(3)
P 		285
C 53.9
(-3)
P 		137.6
(-1.5)
A 		103.2
(-2.1)
A 		60.9
(-2.9)
A 		207.1
(-0.2)
P 		384.2
(3)
P 		330
avr 63.3
(-3) 		122.8
(-1.8) 		123.1
(-1.8) 		94.9
(-2.4) 		200.5
(-0.3) 		367.5
(3) 		304
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 18.1
(3)
A 		7.1
(-2.1)
A 		5.1
(-3)
A 		18.2
(3)
P 		13
B 21.9
(3)
A 		2.4
(-3)
A 		12.6
(0.1)
A 		21.2
(2.8)
P 		20
C 20.3
(3)
A 		3
(-3)
A 		12.7
(0.4)
A 		10.3
(-0.5)
P 		17
avr 20.1
(3) 		4.2
(-3) 		10.1
(-0.8) 		16.6
(1.7) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 7.3
(-3)
A 		37.3
(-0.6)
A 		33.1
(-0.9)
P 		23
(-1.7)
A 		55.3
(0.9)
P 		82.1
(3)
P 		75
B 33.5
(-2.7)
P 		41.9
(-2.3)
M 		27.7
(-3)
P 		35.3
(-2.6)
M 		85.8
(0)
P 		142.1
(3)
P 		114
C 20
(-2.6)
P 		42
(-1.5)
A 		26.3
(-2.3)
A 		12.2
(-3)
A 		67
(-0.2)
P 		128.6
(3)
P 		116
avr 20.3
(-3) 		40.4
(-1.8) 		29
(-2.5) 		23.5
(-2.8) 		69.4
(0) 		117.6
(3) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182318_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18197
Sequence Type Exemplar sequence
Representative Public ID C36C9.1 NCBI
Target Description C36C9.1 /REP_DB=WormBase Gene ID /WP=CE19720 /TR=Q9TZK8 /GB=AAC67424.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075909(11), NM_075966(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075909 NCBI Caenorhabditis elegans C36C9.1 (C36C9.1) mRNA, complete cds. 11/11 A 
NM_075966 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-12) (gei-12) mRNA, complete cds. 11/11 A 
SNAP00000005672 ENSEMBL cdna:SNAP chromosome:CEL140:X:1682951:1686203:1 11/11 None
GENEFINDER00000005680 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1682951:1686203:1 11/11 None
C36C9.1 ENSEMBL cdna:known chromosome:CEL140:X:1682951:1686378:1 gene:C36C9.1 11/11 A 
F52D2.4 ENSEMBL cdna:known chromosome:CEL140:X:1986518:1989599:-1 gene:F52D2.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1682950-1686203(+) 100.0 100.0
Public Domain and Genome References
Gene Title
M. musculus T-cell activation protein TCA3
Gene Symbol gei-12
Ensembl C36C9.1
F52D2.4
Entrez Gene 180497 Entrez gene
180510 Entrez gene
SwissProt Q9TZK8 EMBL-EBI
Q9TXM1 EMBL-EBI
WormBase CE19720 Wormbase
CE23757 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5623 cell inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from direct assay QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_508310 C36C9.1 [Caenorhabditis elegans] gb|AAC67424.1| Hypothetical protein C36C9.1 [Caenorhabditis elegans] 0.0
blast AAC78155 Gex interacting protein protein 12 [Caenorhabditis elegans] ref|NP_508367.1| GEX Interacting protein family member (gei-12) [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:182318_S_AT
tgaatattcacgggatgtcacctgaaagatggctgtacttgaattatttttgcaccgaga
caattccaagattggatggtccttatgccgatgatccaagggttccacctgtgcgaaata
tattcagaagatggtttctccggtttgctgaagcctgcttaggaaatccaaatgaccttg
cagttcagaaagatattgctctcgagttcgttcaggctcggcttgacgatacgagcagct
ccacagattccaccaatatgctctacatgttgtggaaggagtgtatcggacagaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAATATTCACGGGATGTCACCTGA 201 577 2093 Antisense
GGGATGTCACCTGAAAGATGGCTGT 61 497 2104 Antisense
GTCACCTGAAAGATGGCTGTACTTG 422 463 2109 Antisense
GTACTTGAATTATTTTTGCACCGAG 184 461 2127 Antisense
TTTGCACCGAGACAATTCCAAGATT 373 667 2141 Antisense
CCAAGATTGGATGGTCCTTATGCCG 117 277 2158 Antisense
ATTGGATGGTCCTTATGCCGATGAT 682 3 2163 Antisense
ATGGTCCTTATGCCGATGATCCAAG 78 51 2168 Antisense
TTGCTGAAGCCTGCTTAGGAAATCC 185 697 2237 Antisense
AATATGCTCTACATGTTGTGGAAGG 519 173 2347 Antisense
GTGGAAGGAGTGTATCGGACAGAAG 271 491 2364 Antisense
Sequence Source Affymetrix Proprietary Database