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[182317_at]

Description C36C9.1 /REP_DB=WormBase Gene ID /WP=CE19720 /TR=Q9TZK8 /GB=AAC67424.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 12      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 2.5
(-3)
A 		2.9
(-2.5)
A 		4.1
(-0.8)
A 		6.9
(3)
A 		4
B 13.2
(3)
A 		8.7
(0.3)
A 		3.2
(-3)
A 		9.8
(1)
A 		10
C 2.3
(-3)
A 		3.3
(-2.7)
A 		3
(-2.8)
A 		21
(3)
A 		19
avr 6
(-1.3) 		5
(-2) 		3.4
(-3) 		12.6
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 3.5
(-2.9)
A 		4
(-2.9)
A 		4
(-2.9)
A 		1.8
(-3)
A 		5.9
(-2.7)
A 		94.4
(3)
M 		93
B 4.2
(-2.9)
A 		5.2
(-2.8)
A 		4.1
(-2.9)
A 		2.4
(-3)
A 		16.2
(-2.1)
A 		94.7
(3)
P 		92
C 2.8
(-3)
A 		3.8
(-3)
A 		3
(-3)
A 		9.7
(-2.7)
A 		18.1
(-2.3)
A 		139.7
(3)
P 		137
avr 3.5
(-3) 		4.3
(-3) 		3.7
(-3) 		4.6
(-2.9) 		13.4
(-2.4) 		109.6
(3) 		106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.9
(0.6)
A 		0.6
(-3)
A 		1.1
(3)
A 		1
(1.8)
A 		1
B 4.2
(3)
A 		2.2
(-0.4)
A 		0.7
(-3)
A 		2.1
(-0.6)
A 		4
C 0.8
(-3)
A 		0.9
(-2.8)
A 		1
(-2.6)
A 		3.5
(3)
A 		3
avr 2
(2.1) 		1.2
(-1.6) 		0.9
(-3) 		2.2
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.4
(-2.8)
A 		0.9
(-2.9)
A 		0.5
(-3)
A 		1.8
(-2.7)
A 		23
(3)
M 		23
B 1.5
(-2.8)
A 		1.7
(-2.8)
A 		1
(-2.9)
A 		0.6
(-3)
A 		6.6
(-2)
A 		35.3
(3)
P 		35
C 1
(-3)
A 		1.2
(-2.9)
A 		0.8
(-3)
A 		1.9
(-2.9)
A 		5.8
(-2.3)
A 		46.7
(3)
P 		46
avr 1
(-3) 		1.4
(-2.9) 		0.9
(-3) 		1
(-3) 		4.7
(-2.3) 		35
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182317_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18197
Sequence Type Exemplar sequence
Representative Public ID C36C9.1 NCBI
Target Description C36C9.1 /REP_DB=WormBase Gene ID /WP=CE19720 /TR=Q9TZK8 /GB=AAC67424.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075909(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075909 NCBI Caenorhabditis elegans C36C9.1 (C36C9.1) mRNA, complete cds. 11/11 A 
SNAP00000005672 ENSEMBL cdna:SNAP chromosome:CEL140:X:1682951:1686203:1 11/11 None
GENEFINDER00000005680 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1682951:1686203:1 11/11 None
C36C9.1 ENSEMBL cdna:known chromosome:CEL140:X:1682951:1686378:1 gene:C36C9.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1682950-1686203(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C36C9.1
Entrez Gene 180497 Entrez gene
SwissProt Q9TZK8 EMBL-EBI
WormBase CE19720 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508310 C36C9.1 [Caenorhabditis elegans] gb|AAC67424.1| Hypothetical protein C36C9.1 [Caenorhabditis elegans] 0.0
blast AAC78155 Gex interacting protein protein 12 [Caenorhabditis elegans] ref|NP_508367.1| GEX Interacting protein family member (gei-12) [Caenorhabditis elegans] 0.0
blast AAC78158 Hypothetical protein F52D2.6 [Caenorhabditis elegans] ref|NP_508365.1| F52D2.6 [Caenorhabditis elegans] 2.0E-88
Sequence
Target Sequence 
>C. ELEGANS:182317_AT
ccaacccgaccgaagattcttctcaagatgcacctccaacttcaccaccacctcgtattt
ctgatagcttgacggcattcctggaagctcaacaagacttcaatgattatattgatgctc
actacaaagagaagacacaactcttgaaagtgaatttgaatattcacgggatgtcacctg
aaagatggctgtacttgaattatttttgcaccgagacaattccaagattggatggtcctt
atgccgatgatccaagggttccacctgtgcgaaatatattcagaagatggtttctccggt
ttgctgaagcctgcttaggaaatccaaatgaccttgcagttcagaaagatattgctctcg
agttcgttcaggctcggcttgacgatacgagcagctccacagattccaccaatatgctct
acatgttgtggaaggagtgtatcggacagaagaatatcatctcaattgctgatgcgtgtc
tccttgtatatcttcggaaatcggatcctgtcagatacttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAACCCGACCGAAGATTCTTCTCA 127 275 1937 Antisense
AAGATTCTTCTCAAGATGCACCTCC 35 157 1949 Antisense
ACCACCTCGTATTTCTGATAGCTTG 525 85 1983 Antisense
CTGATAGCTTGACGGCATTCCTGGA 173 239 1997 Antisense
GATTATATTGATGCTCACTACAAAG 487 429 2041 Antisense
AGAAGATGGTTTCTCCGGTTTGCTG 50 75 2218 Antisense
GAAATCCAAATGACCTTGCAGTTCA 541 361 2255 Antisense
GATATTGCTCTCGAGTTCGTTCAGG 2 427 2284 Antisense
TTCGTTCAGGCTCGGCTTGACGATA 452 693 2299 Antisense
CGTGTCTCCTTGTATATCTTCGGAA 281 245 2411 Antisense
GAAATCGGATCCTGTCAGATACTTG 94 363 2433 Antisense
Sequence Source Affymetrix Proprietary Database