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[182316_at]

Description C14E2.4 /REP_DB=WormBase Gene ID /WP=CE06831 /TR=Q17985 /GB=AAA85749.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 21      6grp_total > 63      4grp_total > 10      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 30.3
(-2)
A 		12.6
(-3)
A 		30.1
(-2)
A 		115.9
(3)
P 		103
B 45.1
(-2.6)
P 		69.2
(3)
P 		43.5
(-3)
A 		64
(1.8)
P 		26
C 33.4
(-3)
A 		56.8
(-0.6)
P 		53.4
(-0.9)
P 		91.8
(3)
P 		58
avr 36.3
(-3) 		46.2
(-1.9) 		42.3
(-2.3) 		90.6
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 32.6
(-1.9)
A 		27.1
(-3)
A 		45.8
(0.7)
P 		34.1
(-1.6)
A 		57.7
(3)
A 		51.3
(1.7)
M 		31
B 26.7
(-3)
A 		32.5
(-2.3)
A 		74.2
(3)
P 		51
(0.1)
M 		43.4
(-0.9)
A 		38.1
(-1.6)
A 		48
C 41.5
(0.3)
A 		33.2
(-0.9)
A 		59.8
(3)
A 		55.8
(2.4)
A 		19.1
(-3)
A 		39.9
(0.1)
P 		41
avr 33.6
(-2.4) 		30.9
(-3) 		59.9
(3) 		47
(0.3) 		40.1
(-1.1) 		43.1
(-0.5) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 11
(0.5)
A 		2.7
(-3)
A 		7.9
(-0.8)
A 		17
(3)
P 		14
B 14.4
(0.7)
P 		17.1
(3)
P 		10.1
(-3)
A 		13.6
(-0)
P 		7
C 11.1
(-3)
A 		16.3
(1.2)
P 		18.6
(3)
P 		15.5
(0.5)
P 		8
avr 12.2
(-2.6) 		12
(-3) 		12.2
(-2.6) 		15.4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 6
(-3)
A 		9.6
(-1.1)
A 		10
(-0.9)
P 		8.7
(-1.6)
A 		17.4
(3)
A 		12.5
(0.4)
M 		11
B 9.3
(-3)
A 		10.8
(-2)
A 		18
(3)
P 		13.5
(-0.1)
M 		17.7
(2.8)
A 		14.2
(0.4)
A 		9
C 15.4
(3)
A 		10.1
(-0.5)
A 		15.2
(2.9)
A 		11.2
(0.3)
A 		6.2
(-3)
A 		13.4
(1.7)
P 		9
avr 10.2
(-3) 		10.2
(-3) 		14.4
(3) 		11.1
(-1.7) 		13.8
(2.1) 		13.4
(1.6) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182316_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18313
Sequence Type Exemplar sequence
Representative Public ID C14E2.4 NCBI
Target Description C14E2.4 /REP_DB=WormBase Gene ID /WP=CE06831 /TR=Q17985 /GB=AAA85749.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075932(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075932 NCBI Caenorhabditis elegans C14E2.4 (C14E2.4) mRNA, complete cds. 11/11 None
C14E2.4 ENSEMBL cdna:known chromosome:CEL140:X:1817550:1821318:-1 gene:C14E2.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021826 5/11 Cross Hyb Matching Probes None
GENEFINDER00000021835 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1817549-1821318(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14E2.4
Entrez Gene 182616 Entrez gene
SwissProt Q17985 EMBL-EBI
WormBase CE06831 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
19538 protein metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA85749 Hypothetical protein C14E2.4 [Caenorhabditis elegans] ref|NP_508333.1| C14E2.4 [Caenorhabditis elegans] 0.0
blast CAE61721 Hypothetical protein CBG05671 [Caenorhabditis briggsae] 7.0E-66
blast CAA21512 Hypothetical protein Y43F8B.4 [Caenorhabditis elegans] ref|NP_507795.1| Y43F8B.4 [Caenorhabditis elegans] 4.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR005123 EMBL-EBI 2OG-Fe(II) oxygenase superfamily 2.2E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508333.1 1 379-401
C14E2.4 1 379-401
Sequence
Target Sequence 
>C. ELEGANS:182316_AT
gcgaatcctggagacgcatttttgtggtttaattgcaatggcaatttggagcgggaggcg
aagtctctccacggtggctgcccaatcagagctggagagaagatcattgccacgatatgg
attagaattttcaaccagccaattcgggagatgcaagaaactggtggatcgttccatgcc
gggctcttgatcccagaaaaccacgagttttcatctctgcaaaacttttttaggaaatgc
tctgaaacttttttcagatcaaatttttcctacttcaataaaaaaaaagcttccgatatt
gattttcatactctaaaaaatcatttaaactttcagatggtaccttttccttcacttcca
acagaacatacaacacatgccgacgtgtcttccgtagcaattactccgatagtgacttgg
catcttattactattttcggatttattggattcgttattgtgacctgtttgcttgttctt
attat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGAATCCTGGAGACGCATTTTTGT 180 287 715 Antisense
TGGCTGCCCAATCAGAGCTGGAGAG 349 543 789 Antisense
ATTTTCAACCAGCCAATTCGGGAGA 630 13 841 Antisense
GAAACTGGTGGATCGTTCCATGCCG 703 355 871 Antisense
GGCTCTTGATCCCAGAAAACCACGA 414 539 896 Antisense
AAACCACGAGTTTTCATCTCTGCAA 18 125 912 Antisense
TTTCAGATGGTACCTTTTCCTTCAC 272 671 1045 Antisense
TACAACACATGCCGACGTGTCTTCC 635 641 1083 Antisense
GTCTTCCGTAGCAATTACTCCGATA 211 469 1101 Antisense
TACTCCGATAGTGACTTGGCATCTT 346 647 1116 Antisense
TGACCTGTTTGCTTGTTCTTATTAT 451 569 1175 Antisense
Sequence Source Affymetrix Proprietary Database