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[182315_at]

Description K08D9.1 /REP_DB=WormBase Gene ID /WP=CE19981 /TR=Q9TXN0 /GB=AAC69351.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 33      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 5.4
(-3)
A 		27.9
(2.1)
A 		32
(3)
A 		26.5
(1.8)
A 		27
B 29.2
(-0)
A 		32.8
(3)
A 		30
(0.6)
A 		25.7
(-3)
A 		7
C 4
(-3)
A 		4.2
(-2.9)
A 		8.3
(-1)
A 		16.8
(3)
A 		13
avr 12.9
(-3) 		21.6
(2) 		23.4
(3) 		23
(2.8) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 6.3
(-1.9)
A 		6.3
(-1.9)
A 		22.1
(3)
A 		2.7
(-3)
A 		4.3
(-2.5)
A 		12.5
(0)
A 		19
B 17.8
(3)
A 		4.3
(-2.2)
A 		4.9
(-1.9)
A 		5.1
(-1.9)
A 		3.5
(-2.5)
A 		2.1
(-3)
A 		16
C 4.3
(-3)
A 		47.5
(3)
A 		23
(-0.4)
A 		7.5
(-2.6)
A 		4.4
(-3)
A 		4.3
(-3)
A 		43
avr 9.5
(-0.9) 		19.4
(3) 		16.7
(1.9) 		5.1
(-2.6) 		4.1
(-3) 		6.3
(-2.1) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2
(-3)
A 		6.1
(0.8)
A 		8.4
(3)
A 		3.9
(-1.2)
A 		6
B 9.3
(3)
A 		8.1
(1.1)
A 		7
(-0.6)
A 		5.5
(-3)
A 		4
C 1.3
(-2.6)
A 		1.2
(-3)
A 		2.9
(3)
A 		2.8
(2.6)
A 		2
avr 4.2
(-2.7) 		5.1
(0) 		6.1
(3) 		4.1
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.2
(-2.3)
A 		2.2
(-0.8)
A 		4.8
(3)
A 		0.7
(-3)
A 		1.3
(-2.1)
A 		3
(0.4)
A 		4
B 6.2
(3)
A 		1.4
(-2.3)
A 		1.2
(-2.6)
A 		1.3
(-2.4)
A 		1.4
(-2.3)
A 		0.8
(-3)
A 		5
C 1.6
(-2.9)
A 		14.5
(3)
A 		5.9
(-0.9)
A 		1.5
(-3)
A 		1.4
(-3)
A 		1.4
(-3)
A 		13
avr 3
(-0.8) 		6
(3) 		4
(0.5) 		1.2
(-3) 		1.4
(-2.8) 		1.7
(-2.4) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182315_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15774
Sequence Type Exemplar sequence
Representative Public ID K08D9.1 NCBI
Target Description K08D9.1 /REP_DB=WormBase Gene ID /WP=CE19981 /TR=Q9TXN0 /GB=AAC69351.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071485(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071485 NCBI Caenorhabditis elegans K08D9.1 (K08D9.1) mRNA, complete cds. 11/11 None
K08D9.1 ENSEMBL cdna:known chromosome:CEL140:V:3235308:3237819:1 gene:K08D9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3235307-3237819(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08D9.1
Entrez Gene 187145 Entrez gene
SwissProt Q9TXN0 EMBL-EBI
WormBase CE19981 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69351 Hypothetical protein K08D9.1 [Caenorhabditis elegans] ref|NP_503886.1| K08D9.1 [Caenorhabditis elegans] 1.0E-174
blast CAE72239 Hypothetical protein CBG19356 [Caenorhabditis briggsae] 8.0E-58
blast CAB02320 Hypothetical protein F26D10.8 [Caenorhabditis elegans] ref|NP_503063.1| Seven TM Receptor family member (str-187) [Caenorhabditis elegans] 1.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.6E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503886.1 6 56-78,93-115,135-157,172-194,215-234,249-268
K08D9.1 6 56-78,93-115,135-157,172-194,215-234,249-268
Sequence
Target Sequence 
>C. ELEGANS:182315_AT
ttcgacgcactttcctttatgtggattgttgcggagtatagaaaagtgattaaaagggaa
gcatctgcaggaaagttcacatctggatggagattcagtcttttgttcttgtttcctatg
ctttactgtttctggtggggtacagtagttcgcgtctacttttggaaaaattccaatttg
gatgactatactagagctatgatctatgaaactctcaatatatcaatcgaaaacatcagc
tacgttggtttgagattgtataactttgatcagaatggagcaatgacattcaataaagat
gcatggattgctgccagtcatatgaggttcatggtgacactcatccctctagttttgatg
catacaccaattaccgtattcttcatgtgtcctatgttcaatatgggtgcagatttggct
tcaacagttcatataatcactatagcgttgtatcccgctgttgacccgattccaagtttt
tttataatcaaaagttaccgggaagcgattgcaaacgcacttcgagctgttttgtgtttg
aatcaaggcagttctcaagttggagtggtagacaacgtctctctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGACGCACTTTCCTTTATGTGGA 155 695 328 Antisense
TTTGTTCTTGTTTCCTATGCTTTAC 545 667 429 Antisense
TATGCTTTACTGTTTCTGGTGGGGT 512 657 444 Antisense
TGGTGGGGTACAGTAGTTCGCGTCT 516 543 460 Antisense
GATGCATGGATTGCTGCCAGTCATA 548 413 625 Antisense
GAGGTTCATGGTGACACTCATCCCT 476 403 651 Antisense
GACACTCATCCCTCTAGTTTTGATG 301 367 663 Antisense
TTACCGTATTCTTCATGTGTCCTAT 376 683 698 Antisense
TATAGCGTTGTATCCCGCTGTTGAC 509 659 768 Antisense
GCGATTGCAAACGCACTTCGAGCTG 172 291 832 Antisense
GGAGTGGTAGACAACGTCTCTCTCC 374 517 889 Antisense
Sequence Source Affymetrix Proprietary Database