[Home] | [Total List]

[182314_at]

Description C39E6.2 /REP_DB=WormBase Gene ID /WP=CE06938 /TR=Q18531 /GB=AAA93416.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.9
(-3)
A 		3.8
(-2.5)
A 		3
(-2.9)
A 		13.7
(3)
A 		11
B 8.8
(2.2)
A 		5.8
(-1.4)
A 		9.5
(3)
A 		4.5
(-3)
A 		5
C 7.1
(3)
A 		3.2
(-1.1)
A 		1.4
(-3)
A 		5.4
(1.2)
A 		6
avr 6.3
(0.3) 		4.3
(-3) 		4.6
(-2.5) 		7.9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 7.4
(2.7)
A 		3.1
(-1.9)
A 		7.7
(3)
A 		3.1
(-1.9)
A 		7.4
(2.7)
A 		2.1
(-3)
A 		6
B 3
(-2.9)
A 		6.7
(0.5)
A 		3.8
(-2.2)
A 		9.4
(3)
A 		5.4
(-0.7)
A 		2.9
(-3)
A 		7
C 3.6
(-2.5)
A 		22.4
(1.5)
A 		29.4
(3)
A 		10.3
(-1.1)
A 		8.9
(-1.4)
A 		1.5
(-3)
A 		28
avr 4.7
(-1.7) 		10.7
(1.5) 		13.6
(3) 		7.6
(-0.2) 		7.2
(-0.4) 		2.2
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.1
(-1.5)
A 		0.8
(-3)
A 		0.8
(-3)
A 		2
(3)
A 		1
B 2.8
(3)
A 		1.4
(-1.7)
A 		2.2
(1)
A 		1
(-3)
A 		2
C 2.4
(3)
A 		0.9
(-1.7)
A 		0.5
(-3)
A 		0.9
(-1.7)
A 		2
avr 2.1
(3) 		1
(-3) 		1.2
(-1.9) 		1.3
(-1.4) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.4
(0.2)
A 		1.1
(-0.9)
A 		1.7
(1.2)
A 		0.8
(-1.9)
A 		2.2
(3)
A 		0.5
(-3)
A 		2
B 1.1
(-2.3)
A 		2.2
(1.9)
A 		0.9
(-3)
A 		2.5
(3)
A 		2.2
(1.9)
A 		1.1
(-2.3)
A 		2
C 1.3
(-2.3)
A 		6.8
(2.4)
A 		7.5
(3)
A 		2.1
(-1.6)
A 		2.9
(-0.9)
A 		0.5
(-3)
A 		7
avr 1.3
(-1.7) 		3.4
(3) 		3.4
(3) 		1.8
(-0.6) 		2.4
(0.8) 		0.7
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182314_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16367
Sequence Type Exemplar sequence
Representative Public ID C39E6.2 NCBI
Target Description C39E6.2 /REP_DB=WormBase Gene ID /WP=CE06938 /TR=Q18531 /GB=AAA93416.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076412(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076412 NCBI Caenorhabditis elegans C39E6.2 (C39E6.2) mRNA, complete cds. 11/11 None
SNAP00000034197 ENSEMBL cdna:SNAP chromosome:CEL140:X:4754646:4755086:-1 11/11 None
GENEFINDER00000034205 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4754646:4755086:-1 11/11 None
C39E6.2 ENSEMBL cdna:known chromosome:CEL140:X:4754646:4755128:-1 gene:C39E6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4754646-4755129(-) 95.65 100.0
Public Domain and Genome References
Gene Title
Ensembl C39E6.2
Entrez Gene 183341 Entrez gene
SwissProt Q18531 EMBL-EBI
WormBase CE06938 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA93416 Hypothetical protein C39E6.2 [Caenorhabditis elegans] ref|NP_508813.1| C39E6.2 [Caenorhabditis elegans] 4.0E-81
blast AAA93416 Hypothetical protein C39E6.2 [Caenorhabditis elegans] ref|NP_508813.1| C39E6.2 [Caenorhabditis elegans] 4.0E-72
Sequence
Target Sequence 
>C. ELEGANS:182314_AT
gaatggtttttcgtatgcctaatcatcggatggcttttcaacacgtctggttcgagttca
gcgatgacggatatctttctgcatttctctccgatgacgagcttactgacagtggggatg
aaattgatattggagacgtttggtttcccgacattggctatgtcagttgtgatgaactgt
tcgagactgatgaggaagactacgttttgtggcttgagagaatgcacattttgagttttg
agaatcccctatacgacgaattcccatacgaagacacagaagaaggttcaatcgaagatt
ttgtgtcatcgctctggagccttgatcgcattggtgaggatgccgaccttgatgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGGTTTTTCGTATGCCTAATCA 414 333 74 Antisense
GCTTTTCAACACGTCTGGTTCGAGT 326 295 106 Antisense
TGACGGATATCTTTCTGCATTTCTC 448 571 138 Antisense
TGCATTTCTCTCCGATGACGAGCTT 497 579 153 Antisense
GGTTTCCCGACATTGGCTATGTCAG 7 507 215 Antisense
GGAAGACTACGTTTTGTGGCTTGAG 2 531 267 Antisense
GAGTTTTGAGAATCCCCTATACGAC 84 397 306 Antisense
CCCTATACGACGAATTCCCATACGA 349 257 320 Antisense
GAAGATTTTGTGTCATCGCTCTGGA 434 337 367 Antisense
CTCTGGAGCCTTGATCGCATTGGTG 371 231 385 Antisense
GGTGAGGATGCCGACCTTGATGACA 621 499 406 Antisense
Sequence Source Affymetrix Proprietary Database