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[182313_at]

Description C50B6.12 /REP_DB=WormBase Gene ID /WP=CE15728 /TR=O17691 /GB=CAB02860.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 11      6grp_cgc > 55      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 3.5
(-3)
A 		17.5
(-2.6)
A 		12.1
(-2.7)
A 		195.6
(3)
P 		192
B 49.7
(-0.2)
A 		17.5
(-2.3)
A 		7.2
(-3)
A 		99.1
(3)
A 		92
C 54
(-0.2)
A 		48.2
(-0.6)
A 		13.2
(-3)
A 		100.8
(3)
P 		88
avr 35.7
(-1.8) 		27.7
(-2.2) 		10.8
(-3) 		131.8
(3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 20.8
(-1.4)
A 		8.3
(-3)
A 		56.2
(3)
A 		38.8
(0.8)
A 		14
(-2.3)
A 		8.5
(-3)
A 		48
B 25.9
(-3)
A 		50
(3)
A 		37.5
(-0.1)
A 		29.2
(-2.2)
A 		27.8
(-2.5)
A 		39.2
(0.3)
A 		24
C 3.1
(-2.9)
A 		84
(3)
A 		15.9
(-2)
A 		2.9
(-2.9)
A 		1.5
(-3)
A 		33.9
(-0.6)
A 		83
avr 16.6
(-2.6) 		47.4
(3) 		36.5
(1) 		23.6
(-1.3) 		14.4
(-3) 		27.2
(-0.7) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 1.3
(-3)
A 		3.8
(-2.5)
A 		3.2
(-2.6)
A 		28.6
(3)
P 		27
B 15.8
(1.4)
A 		4.3
(-2.2)
A 		1.7
(-3)
A 		21.1
(3)
A 		19
C 17.9
(3)
A 		13.9
(1.2)
A 		4.6
(-3)
A 		17
(2.6)
P 		13
avr 11.7
(-0.3) 		7.3
(-1.7) 		3.2
(-3) 		22.2
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 3.8
(-2)
A 		3
(-2.5)
A 		12.2
(3)
A 		9.8
(1.6)
A 		4.2
(-1.8)
A 		2.1
(-3)
A 		10
B 9
(-2.1)
A 		16.6
(3)
A 		9.1
(-2.1)
A 		7.7
(-3)
A 		11.3
(-0.6)
A 		14.6
(1.7)
A 		9
C 1.2
(-2.8)
A 		25.6
(3)
A 		4
(-2.2)
A 		0.6
(-3)
A 		0.5
(-3)
A 		11.3
(-0.4)
A 		25
avr 4.7
(-3) 		15.1
(3) 		8.4
(-0.9) 		6
(-2.3) 		5.3
(-2.7) 		9.3
(-0.3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182313_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14608
Sequence Type Exemplar sequence
Representative Public ID C50B6.12 NCBI
Target Description C50B6.12 /REP_DB=WormBase Gene ID /WP=CE15728 /TR=O17691 /GB=CAB02860.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073903(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073903 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-37) (str-37) mRNA, complete cds. 11/11 None
C50B6.12 ENSEMBL cdna:known chromosome:CEL140:V:13330355:13331458:1 gene:C50B6.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13330354-13331458(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-37
Ensembl C50B6.12
Entrez Gene 183639 Entrez gene
SwissProt O17691 EMBL-EBI
WormBase CE15728 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02860 Hypothetical protein C50B6.12 [Caenorhabditis elegans] ref|NP_506304.1| Seven TM Receptor family member (str-37) [Caenorhabditis elegans] 1.0E-171
blast CAE66305 Hypothetical protein CBG11555 [Caenorhabditis briggsae] 3.0E-49
blast AAK18945 Seven tm receptor protein 39 [Caenorhabditis elegans] ref|NP_503782.1| Seven TM Receptor family member (str-39) [Caenorhabditis elegans] 5.0E-48
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506304.1 7 7-29,36-58,88-110,130-152,196-218,242-264,279-301
C50B6.12 7 7-29,36-58,88-110,130-152,196-218,242-264,279-301
Sequence
Target Sequence 
>C. ELEGANS:182313_AT
aatactctggctttgggtcttacttgtaattggtgttggagcactattttgtgtgactcc
tcttattatgttacagccagatgattatgctgatgaatatgtaaaagatgaatttcaccg
cgtttattccagaaatattacagaaattgcaagattgatccttgtagcatatgatgaaaa
caacaattttcgttggaaaaacttatcgtactgtttcataggagccataattttgaacag
tctctactcaataattatttattgtgcgttaaaaatgcgacacaacttattgaaacaatt
ggaacatgtctcaccggaatatcgaaaacttgaaaatcagtttttcaaaacaataataat
acaaatcgcccttccaactatcttcctaacattcccaatgatgatattattgagcacgcc
tattctgaatcttgaagtcagttttaattcgagtatttatcattggggaatcagttttta
tccgtcactggacagtattgctgtcatgcttattgtttctgaatataaagtgtgcattag
aaaaattttcaaatgttctaacacagtcgacaccact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATACTCTGGCTTTGGGTCTTACTT 163 171 396 Antisense
ACTATTTTGTGTGACTCCTCTTATT 648 101 438 Antisense
GAATTTCACCGCGTTTATTCCAGAA 211 325 505 Antisense
ATCGTACTGTTTCATAGGAGCCATA 469 35 600 Antisense
GGAACATGTCTCACCGGAATATCGA 501 529 696 Antisense
TAATAATACAAATCGCCCTTCCAAC 176 635 749 Antisense
CTATCTTCCTAACATTCCCAATGAT 708 223 773 Antisense
TATTGAGCACGCCTATTCTGAATCT 675 665 803 Antisense
GGGGAATCAGTTTTTATCCGTCACT 4 245 860 Antisense
GCTGTCATGCTTATTGTTTCTGAAT 285 295 895 Antisense
ATGTTCTAACACAGTCGACACCACT 130 47 948 Antisense
Sequence Source Affymetrix Proprietary Database