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[182311_at]

Description C36C9.2 /REP_DB=WormBase Gene ID /WP=CE19721 /TR=Q9TZL0 /GB=AAC67425.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 16      6grp_cgc > 94      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 2
(-3)
A 		9.6
(0.3)
A 		15.9
(3)
A 		5.3
(-1.6)
A 		14
B 2
(-3)
A 		6.8
(3)
A 		4.4
(0)
A 		3.2
(-1.5)
A 		5
C 4
(-3)
A 		6
(-2.7)
A 		5.2
(-2.8)
A 		51.8
(3)
A 		48
avr 2.7
(-3) 		7.5
(-1.3) 		8.5
(-1) 		20.1
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 10.9
(-0.8)
A 		12.3
(-0.4)
A 		23.9
(3)
A 		3.3
(-3)
A 		3.6
(-2.9)
A 		5.3
(-2.4)
A 		21
B 5.7
(-1.7)
A 		8.4
(-0.7)
A 		2.5
(-2.9)
A 		18.6
(3)
A 		10.6
(0.1)
A 		2.2
(-3)
A 		16
C 4
(-2.7)
A 		3.2
(-2.9)
A 		2.9
(-3)
A 		23.5
(3)
A 		6.5
(-2)
A 		11.2
(-0.6)
A 		21
avr 6.9
(-2.5) 		8
(-1.8) 		9.8
(-0.6) 		15.1
(3) 		6.9
(-2.5) 		6.2
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.7
(-3)
A 		2.1
(-0.6)
A 		4.2
(3)
A 		0.8
(-2.8)
A 		4
B 0.7
(-3)
A 		1.7
(3)
A 		1
(-1.2)
A 		0.7
(-3)
A 		1
C 1.3
(-3)
A 		1.7
(-2.7)
A 		1.8
(-2.6)
A 		8.7
(3)
A 		7
avr 0.9
(-3) 		1.8
(-0.8) 		2.3
(0.4) 		3.4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 2
(-1.4)
A 		4.4
(1.9)
A 		5.2
(3)
A 		0.8
(-3)
A 		1.1
(-2.6)
A 		1.3
(-2.3)
A 		4
B 2
(-1)
A 		2.8
(0.1)
A 		0.6
(-3)
A 		4.9
(3)
A 		4.3
(2.2)
A 		0.8
(-2.7)
A 		4
C 1.5
(-1.8)
A 		1
(-2.6)
A 		0.7
(-3)
A 		4.7
(3)
A 		2.1
(-0.9)
A 		3.7
(1.5)
A 		4
avr 1.8
(-3) 		2.7
(0.2) 		2.2
(-1.6) 		3.5
(3) 		2.5
(-0.5) 		1.9
(-2.6) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182311_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18546
Sequence Type Exemplar sequence
Representative Public ID C36C9.2 NCBI
Target Description C36C9.2 /REP_DB=WormBase Gene ID /WP=CE19721 /TR=Q9TZL0 /GB=AAC67425.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075907(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075907 NCBI Caenorhabditis elegans T BoX family member (tbx-31) (tbx-31) mRNA, complete cds. 11/11 A 
GENEFINDER00000005679 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1667163:1674151:-1 11/11 None
SNAP00000005669 ENSEMBL cdna:SNAP chromosome:CEL140:X:1671143:1672372:-1 11/11 None
C36C9.2 ENSEMBL cdna:known chromosome:CEL140:X:1671143:1674151:-1 gene:C36C9.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1671142-1674151(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tbx-31
Ensembl C36C9.2
Entrez Gene 183272 Entrez gene
SwissProt Q9TZL0 EMBL-EBI
WormBase CE19721 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_508308 T BoX family member (tbx-31) [Caenorhabditis elegans] gb|AAC67425.1| T box family protein 31 [Caenorhabditis elegans] 0.0
blast AAC17010 T box family protein 32 [Caenorhabditis elegans] ref|NP_508304.1| T BoX family member (tbx-32) [Caenorhabditis elegans] sp|O61764|TBX32_CAEEL Putative T-box protein 0.0
blast E89467 protein ZK380.1 [imported] - Caenorhabditis elegans pir||T33067 hypothetical protein ZK380.1 - Caenorhabditis elegans (fragment) 1.0E-144
blast NP_508308 T BoX family member (tbx-31) [Caenorhabditis elegans] gb|AAC67425.1| T box family protein 31 [Caenorhabditis elegans] 1.0E-137
Sequence
Target Sequence 
>C. ELEGANS:182311_AT
aaaactgcaatcctgactttccaatcaaccgaacctatgcagctggaatttaagtattgc
accaaaatgctgctcagaacggacaaaccagttggcaacttctccatccagctcagcggt
ccttacctggaacatctcctgaatctttcccatcatctctgcagattttctgagtataac
ttgtttgtcaaagcacactttccaagaggctcctacggatctttgacatcaatgactggt
cctgcggttgaaattcctgagactcaagaaaatattacaattatttgggtcaaaaaagat
tttccggaaaacgtgaataagtacccagttgcaattaattcattaatcacggaagccatc
gcttcaaacggtaccaaccaagtactgctgacatcgaagtatccatccgattgcacgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACTGCAATCCTGACTTTCCAAT 481 131 1714 Antisense
CCAATCAACCGAACCTATGCAGCTG 562 277 1734 Antisense
AAACCAGTTGGCAACTTCTCCATCC 127 125 1798 Antisense
GGAACATCTCCTGAATCTTTCCCAT 438 529 1842 Antisense
TTTCCCATCATCTCTGCAGATTTTC 21 671 1859 Antisense
AAAGCACACTTTCCAAGAGGCTCCT 631 123 1903 Antisense
AGAGGCTCCTACGGATCTTTGACAT 184 69 1918 Antisense
GACTGGTCCTGCGGTTGAAATTCCT 365 375 1947 Antisense
GAAGCCATCGCTTCAAACGGTACCA 581 343 2065 Antisense
ACCAACCAAGTACTGCTGACATCGA 632 83 2086 Antisense
GAAGTATCCATCCGATTGCACGATT 80 337 2109 Antisense
Sequence Source Affymetrix Proprietary Database