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[182310_at]

Description K02B12.2 /REP_DB=WormBase Gene ID /WP=CE06063 /TR=Q21114 /GB=CAB00032.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 12.7
(-1.6)
A 		7.7
(-2.3)
A 		2.9
(-3)
A 		45.5
(3)
A 		43
B 2.3
(-2.7)
A 		2.1
(-2.7)
A 		0.8
(-3)
A 		27.2
(3)
A 		26
C 2.6
(-2.9)
A 		1.3
(-3)
A 		2.5
(-3)
A 		150.3
(3)
P 		149
avr 5.9
(-2.7) 		3.7
(-2.9) 		2.1
(-3) 		74.3
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 4.9
(-2.6)
A 		2.1
(-2.9)
A 		18.1
(-1.3)
A 		1
(-3)
A 		2.7
(-2.8)
A 		61.6
(3)
A 		61
B 4.4
(-2.8)
A 		1.2
(-3)
A 		2.6
(-2.9)
A 		6.8
(-2.6)
A 		9.9
(-2.3)
A 		80.4
(3)
P 		79
C 14.5
(-2.2)
A 		4.1
(-2.9)
A 		2.8
(-3)
A 		4.5
(-2.9)
A 		6.3
(-2.8)
A 		95.2
(3)
P 		92
avr 7.9
(-2.6) 		2.5
(-3) 		7.8
(-2.6) 		4.1
(-2.9) 		6.3
(-2.7) 		79.1
(3) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 4.6
(0.9)
A 		1.7
(-2.1)
A 		0.8
(-3)
A 		6.7
(3)
A 		6
B 0.7
(-2.5)
A 		0.5
(-2.7)
A 		0.2
(-3)
A 		5.8
(3)
A 		6
C 0.9
(-2.9)
A 		0.4
(-3)
A 		0.9
(-2.9)
A 		25.3
(3)
P 		25
avr 2.1
(-2.3) 		0.9
(-2.9) 		0.6
(-3) 		12.6
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 0.9
(-2.8)
A 		0.7
(-2.8)
A 		4
(-1.5)
A 		0.3
(-3)
A 		0.8
(-2.8)
A 		15
(3)
A 		15
B 1.5
(-2.8)
A 		0.4
(-3)
A 		0.6
(-3)
A 		1.8
(-2.7)
A 		4
(-2.3)
A 		30
(3)
P 		30
C 5.4
(-2.1)
A 		1.3
(-2.9)
A 		0.7
(-3)
A 		0.9
(-3)
A 		2
(-2.8)
A 		31.9
(3)
P 		31
avr 2.6
(-2.6) 		0.8
(-3) 		1.8
(-2.8) 		1
(-3) 		2.3
(-2.6) 		25.6
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182310_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1523
Sequence Type Exemplar sequence
Representative Public ID K02B12.2 NCBI
Target Description K02B12.2 /REP_DB=WormBase Gene ID /WP=CE06063 /TR=Q21114 /GB=CAB00032.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059905(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059905 NCBI Caenorhabditis elegans K02B12.2 (K02B12.2) mRNA, complete cds. 11/11 None
SNAP00000001143 ENSEMBL cdna:SNAP chromosome:CEL140:I:8519833:8520476:-1 11/11 None
GENEFINDER00000001157 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8519833:8520476:-1 11/11 None
K02B12.2 ENSEMBL cdna:known chromosome:CEL140:I:8519833:8520476:-1 gene:K02B12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8519763-8520407(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02B12.2
Entrez Gene 186868 Entrez gene
SwissProt Q21114 EMBL-EBI
WormBase CE06063 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00032 Hypothetical protein K02B12.2 [Caenorhabditis elegans] ref|NP_492306.1| K02B12.2 [Caenorhabditis elegans] 8.0E-83
blast CAE67115 Hypothetical protein CBG12529 [Caenorhabditis briggsae] 1.0E-16
blast CAE67137 Hypothetical protein CBG12560 [Caenorhabditis briggsae] 7.0E-10
Sequence
Target Sequence 
>C. ELEGANS:182310_AT
tatggccgatgaatctgtggatcaaatgagaatcgaggaatttctagtgatagttaatca
ttacactactcatgtaaagtctacaaccgatctaagcaaatgcgggaattgcacatgggt
tcttccgaaattggatgcacttcagaagaaaatgatcgattatcttcaatacagaaaaga
tgatgaggatacaattgaatggaatacacttattatcgaactattagatatgccagatga
gcacaacgcagaggatattcatagcaaaccgtcaccagcgaaaaagagaaaatcagaaga
agtcaaaccaaaaattgaggcaaaaatcgaaaagaaagttgcgcgtgaagagacgaaact
tatggaatcttcagataaaattgataaagcaattgaaagtcttgttgctgaaactgagaa
tcaatacgatccactggata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGGCCGATGAATCTGTGGATCAA 370 655 18 Antisense
GATAGTTAATCATTACACTACTCAT 495 425 66 Antisense
TAAAGTCTACAACCGATCTAAGCAA 319 637 92 Antisense
GAATTGCACATGGGTTCTTCCGAAA 38 325 123 Antisense
TCTTCCGAAATTGGATGCACTTCAG 654 617 138 Antisense
GATATGCCAGATGAGCACAACGCAG 326 423 244 Antisense
GAGCACAACGCAGAGGATATTCATA 424 389 256 Antisense
GATATTCATAGCAAACCGTCACCAG 147 427 271 Antisense
GCAAACCGTCACCAGCGAAAAAGAG 78 317 281 Antisense
GAGACGAAACTTATGGAATCTTCAG 704 393 367 Antisense
GAGAATCAATACGATCCACTGGATA 279 391 433 Antisense
Sequence Source Affymetrix Proprietary Database