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[182308_at]

Description C11G10.2 /REP_DB=WormBase Gene ID /WP=CE03016 /TR=Q17904 /GB=CAA91974.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 52      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 49.6
(-1.6)
A 		51.3
(-1.4)
A 		89.2
(3)
A 		37.5
(-3)
A 		52
B 38.6
(1.3)
A 		45
(3)
A 		21.8
(-3)
A 		32.8
(-0.2)
A 		23
C 90.9
(3)
A 		82.1
(2.3)
A 		50
(-0.1)
A 		12
(-3)
A 		79
avr 59.7
(3) 		59.5
(3) 		53.7
(1.9) 		27.4
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 71.3
(3)
A 		50.6
(1.1)
A 		6.4
(-3)
A 		10.2
(-2.6)
A 		7.3
(-2.9)
A 		30.9
(-0.7)
A 		65
B 35
(-1.1)
A 		17.3
(-3)
A 		73.4
(3)
A 		56.2
(1.2)
A 		32.8
(-1.3)
A 		26.2
(-2)
A 		56
C 42.9
(-1.6)
A 		79.8
(3)
A 		57.8
(0.3)
A 		31.4
(-3)
A 		45.5
(-1.3)
A 		34.4
(-2.6)
A 		48
avr 49.7
(3) 		49.2
(2.9) 		45.9
(1.9) 		32.6
(-1.8) 		28.5
(-3) 		30.5
(-2.4) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 18
(1.2)
A 		11.1
(-1.1)
A 		23.3
(3)
A 		5.5
(-3)
A 		18
B 12.3
(3)
A 		11.1
(2)
A 		5
(-3)
A 		7
(-1.4)
A 		7
C 30.1
(3)
A 		23.6
(1.6)
A 		17.4
(0.3)
A 		2
(-3)
A 		28
avr 20.1
(3) 		15.3
(1.1) 		15.2
(1.1) 		4.8
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 13.1
(1.2)
A 		18
(3)
A 		1.4
(-3)
A 		2.6
(-2.6)
A 		2.2
(-2.7)
A 		7.5
(-0.8)
A 		17
B 12.2
(0.2)
A 		5.8
(-3)
A 		17.8
(3)
A 		14.9
(1.6)
A 		13.3
(0.8)
A 		9.8
(-1)
A 		12
C 15.9
(0.2)
A 		24.3
(3)
A 		14.7
(-0.2)
A 		6.3
(-3)
A 		14.7
(-0.2)
A 		11.5
(-1.3)
A 		18
avr 13.7
(1.3) 		16
(3) 		11.3
(-0.5) 		7.9
(-3) 		10.1
(-1.4) 		9.6
(-1.7) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182308_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18006
Sequence Type Exemplar sequence
Representative Public ID C11G10.2 NCBI
Target Description C11G10.2 /REP_DB=WormBase Gene ID /WP=CE03016 /TR=Q17904 /GB=CAA91974.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078115(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078115 NCBI Caenorhabditis elegans C11G10.2 (C11G10.2) mRNA, complete cds. 11/11 None
GENEFINDER00000027123 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15138820:15142262:-1 9/11 None
SNAP00000027122 ENSEMBL cdna:SNAP chromosome:CEL140:X:15141921:15142262:-1 11/11 None
C11G10.2 ENSEMBL cdna:known chromosome:CEL140:X:15141921:15142262:-1 gene:C11G10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15141920-15142262(-) 88.3 100.0
Public Domain and Genome References
Gene Title
Ensembl C11G10.2
Entrez Gene 182522 Entrez gene
SwissProt Q17904 EMBL-EBI
WormBase CE03016 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91974 Hypothetical protein C11G10.2 [Caenorhabditis elegans] ref|NP_510516.1| C11G10.2 [Caenorhabditis elegans] 9.0E-32
blast CAA91974 Hypothetical protein C11G10.2 [Caenorhabditis elegans] ref|NP_510516.1| C11G10.2 [Caenorhabditis elegans] 3.0E-26
blast CAE63254 Hypothetical protein CBG07622 [Caenorhabditis briggsae] 1.0E-21
blast CAE63254 Hypothetical protein CBG07622 [Caenorhabditis briggsae] 2.0E-21
Sequence
Target Sequence 
>C. ELEGANS:182308_AT
aatccgactcgaaatcgcgtcgccaacaattcgtcaacgcattcgctagccactctgaac
aataaccaaccgctaccactaccaccgcctccactcgaaccactccgtgagaccactcca
ttgacgaacggtggtggcaagtacaaaaaagtaaccgtacccgttccggacccgactcgt
cgacttcgccaatccatcccaccaacctattcatcgtttccggttagtttgatttttccc
cggttttatgaacagagggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCCGACTCGAAATCGCGTCGCCA 119 169 58 Antisense
GAAATCGCGTCGCCAACAATTCGTC 203 361 68 Antisense
CGTCGCCAACAATTCGTCAACGCAT 678 245 75 Antisense
CAATTCGTCAACGCATTCGCTAGCC 76 181 84 Antisense
CATTCGCTAGCCACTCTGAACAATA 381 215 97 Antisense
TCTGAACAATAACCAACCGCTACCA 693 607 111 Antisense
CGTGAGACCACTCCATTGACGAACG 517 245 163 Antisense
CACTCCATTGACGAACGGTGGTGGC 406 197 171 Antisense
GACGAACGGTGGTGGCAAGTACAAA 631 311 180 Antisense
TATTCATCGTTTCCGGTTAGTTTGA 370 657 265 Antisense
TCCCCGGTTTTATGAACAGAGGGAG 695 593 294 Antisense
Sequence Source Affymetrix Proprietary Database