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[182307_at]

Description F48D6.2 /REP_DB=WormBase Gene ID /WP=CE07259 /TR=Q20562 /GB=AAB00596.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 24      4grp_total > 30      6grp_cgc > 30      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 107.1
(3)
P 		55.8
(-0.1)
A 		6.4
(-3)
A 		39
(-1.1)
A 		101
B 118.8
(3)
P 		18.1
(-3)
A 		41.2
(-1.6)
A 		103.8
(2.1)
P 		101
C 95.8
(1.8)
P 		46.4
(-1.4)
A 		22.4
(-3)
A 		114
(3)
P 		92
avr 107.2
(3) 		40.1
(-1.8) 		23.3
(-3) 		85.6
(1.5) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 79.1
(3)
A 		63.8
(1.2)
A 		64.3
(1.2)
A 		36.3
(-2.1)
A 		28.4
(-3)
A 		38.2
(-1.8)
A 		51
B 34.5
(-1)
A 		75.8
(3)
P 		21.2
(-2.3)
A 		43.2
(-0.2)
A 		13.8
(-3)
A 		38.5
(-0.6)
A 		62
C 46.9
(0.6)
A 		23.8
(-3)
A 		57.8
(2.4)
A 		61.8
(3)
A 		51.7
(1.4)
A 		41.9
(-0.1)
P 		38
avr 53.5
(2.7) 		54.5
(3) 		47.8
(1.3) 		47.1
(1.1) 		31.3
(-3) 		39.5
(-0.9) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 39
(3)
P 		12.1
(-1.3)
A 		1.7
(-3)
A 		5.7
(-2.4)
A 		37
B 37.9
(3)
P 		4.5
(-3)
A 		9.5
(-2.1)
A 		22.1
(0.2)
P 		33
C 31.7
(3)
P 		13.3
(-1.6)
A 		7.8
(-3)
A 		19.2
(-0.1)
P 		24
avr 36.2
(3) 		10
(-2.3) 		6.3
(-3) 		15.7
(-1.1) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 14.6
(-0.4)
A 		22.7
(3)
A 		14
(-0.7)
A 		9.2
(-2.7)
A 		8.6
(-3)
A 		9.3
(-2.7)
A 		14
B 12
(-0.9)
A 		25.2
(3)
P 		5.1
(-3)
A 		11.4
(-1.1)
A 		5.6
(-2.9)
A 		14.4
(-0.2)
A 		20
C 17.4
(3)
A 		7.3
(-3)
A 		14.7
(1.4)
A 		12.4
(0)
A 		16.7
(2.6)
A 		14
(1)
P 		10
avr 14.7
(0.3) 		18.4
(3) 		11.3
(-2.3) 		11
(-2.5) 		10.3
(-3) 		12.6
(-1.3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182307_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17031
Sequence Type Exemplar sequence
Representative Public ID F48D6.2 NCBI
Target Description F48D6.2 /REP_DB=WormBase Gene ID /WP=CE07259 /TR=Q20562 /GB=AAB00596.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029518(11), NM_001029517(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029518 NCBI Caenorhabditis elegans Serpentine Receptor, class V family member (srv-5) (srv-5) mRNA, complete cds. 11/11 None
NM_001029517 NCBI Caenorhabditis elegans Serpentine Receptor, class V family member (srv-5) (srv-5) mRNA, complete cds. 11/11 None
GENEFINDER00000013687 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4252330:4254059:1 11/11 None
SNAP00000013682 ENSEMBL cdna:SNAP chromosome:CEL140:X:4252607:4254059:1 11/11 None
F48D6.2b ENSEMBL cdna:known chromosome:CEL140:X:4252330:4254059:1 gene:F48D6.2 11/11 None
F48D6.2a ENSEMBL cdna:known chromosome:CEL140:X:4252330:4254059:1 gene:F48D6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4252330-4254060(+) 100.0 100.0
Public Domain and Genome References
Ensembl F48D6.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00596 Serpentine receptor, class v protein 5, isoform a [Caenorhabditis elegans] ref|NP_001024688.1| Serpentine Receptor, class V family member (srv-5) [Caenorhabditis elegans] 0.0
blast AAW88398 Serpentine receptor, class v protein 5, isoform b [Caenorhabditis elegans] ref|NP_001024689.1| Serpentine Receptor, class V family member (srv-5) [Caenorhabditis elegans] 0.0
blast AAW88398 Serpentine receptor, class v protein 5, isoform b [Caenorhabditis elegans] ref|NP_001024689.1| Serpentine Receptor, class V family member (srv-5) [Caenorhabditis elegans] 1.0E-178
blast AAB00596 Serpentine receptor, class v protein 5, isoform a [Caenorhabditis elegans] ref|NP_001024688.1| Serpentine Receptor, class V family member (srv-5) [Caenorhabditis elegans] 1.0E-176
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024689.1 7 4-26,39-61,81-103,140-162,177-199,231-253,273-292
NP_001024688.1 7 4-26,39-61,81-103,136-158,173-195,227-249,269-288
F48D6.2b 7 4-26,39-61,81-103,140-162,177-199,231-253,273-292
F48D6.2a 7 4-26,39-61,81-103,136-158,173-195,227-249,269-288
GENEFINDER00000013687 7 4-26,39-61,81-103,136-158,173-195,227-249,269-288
SNAP00000013682 4 80-102,117-139,171-193,213-232
Sequence
Target Sequence 
>C. ELEGANS:182307_AT
ataggaattctaccaactcatgcttggccgggttttacttattggtttatgataacttct
tcatctatacgattaacaaatgattccttatccacagcgcttgttgcatacgttgacgga
atttgttgtcttggaacgtgtgttttctgcatgatttgctatactgcaacgtgtttcttg
atacggaaaaattggaaacgtgtgaaaactgacacggtattccgaaaaaacaatgcacaa
tctgctgcagaaagaagtctacttgtttccgccattttatcatttatcgtgttaatattg
aacactgctgtacaagttgttaccattttaatatcctggggtggtgcgacaacattactt
tttgttcaagacctctcatatcctatgattgatcttatgtattcccattttccatgggcg
ttattagtcacgtcgggagttctgaggaagcaaatgatttacgatacaaaaattttccta
cgaacggctttcaagcttgacgatgcatcggtgaacacaatacgggttgggcatactgta
tctccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAGGAATTCTACCAACTCATGCTT 436 21 433 Antisense
CTCATGCTTGGCCGGGTTTTACTTA 519 227 449 Antisense
ACAAATGATTCCTTATCCACAGCGC 668 111 508 Antisense
TCCACAGCGCTTGTTGCATACGTTG 414 587 523 Antisense
AAAGAAGTCTACTTGTTTCCGCCAT 41 123 683 Antisense
TTCCGCCATTTTATCATTTATCGTG 125 699 699 Antisense
ATATCCTGGGGTGGTGCGACAACAT 462 21 763 Antisense
GTTCAAGACCTCTCATATCCTATGA 232 445 796 Antisense
GTCACGTCGGGAGTTCTGAGGAAGC 575 463 859 Antisense
TTTTCCTACGAACGGCTTTCAAGCT 385 675 905 Antisense
ACGGGTTGGGCATACTGTATCTCCC 644 95 954 Antisense
Sequence Source Affymetrix Proprietary Database