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[182305_at]

Description F47F2.3 /REP_DB=WormBase Gene ID /WP=CE04605 /TR=Q20542 /GB=AAK39235.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 08      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 30.3
(-1.2)
A 		8.3
(-3)
A 		73.2
(2.3)
A 		82
(3)
A 		74
B 39.8
(3)
A 		36.8
(1.8)
A 		24.3
(-3)
A 		34.1
(0.8)
A 		16
C 20.5
(-3)
A 		53.7
(-1.1)
A 		45.4
(-1.5)
P 		123.5
(3)
P 		103
avr 30.2
(-3) 		32.9
(-2.7) 		47.6
(-0.9) 		79.9
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 13.7
(-2.7)
A 		45.2
(0.9)
A 		63.8
(3)
M 		32.8
(-0.5)
A 		23.7
(-1.6)
A 		11.2
(-3)
A 		53
B 37.8
(1)
A 		49.1
(2.6)
A 		22.9
(-1.1)
A 		45.1
(2)
A 		52.3
(3)
P 		9.4
(-3)
A 		43
C 10.6
(-3)
A 		45.7
(2.4)
A 		49.9
(3)
A 		42.8
(1.9)
A 		11.9
(-2.8)
A 		16.2
(-2.1)
A 		39
avr 20.7
(-1.5) 		46.7
(3) 		45.5
(2.8) 		40.2
(1.9) 		29.3
(-0) 		12.3
(-3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 11
(0.2)
A 		1.8
(-3)
A 		19.1
(3)
A 		12
(0.5)
A 		17
B 12.7
(3)
A 		9.1
(-0)
A 		5.6
(-3)
A 		7.3
(-1.6)
A 		7
C 6.8
(-3)
A 		15.4
(0.7)
A 		15.8
(0.9)
P 		20.8
(3)
P 		14
avr 10.2
(-1.2) 		8.8
(-3) 		13.5
(3) 		13.4
(2.9) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 2.5
(-3)
A 		16.1
(3)
A 		13.9
(2)
M 		8.3
(-0.4)
A 		7.2
(-0.9)
A 		2.7
(-2.9)
A 		14
B 13.1
(0.2)
A 		16.3
(1.3)
A 		5.6
(-2.3)
A 		11.9
(-0.2)
A 		21.3
(3)
P 		3.5
(-3)
A 		18
C 3.9
(-3)
A 		13.9
(3)
A 		12.7
(2.3)
A 		8.6
(-0.2)
A 		3.9
(-3)
A 		5.4
(-2.1)
A 		10
avr 6.5
(-1.6) 		15.4
(3) 		10.7
(0.5) 		9.6
(-0) 		10.8
(0.6) 		3.9
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182305_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18614
Sequence Type Exemplar sequence
Representative Public ID F47F2.3 NCBI
Target Description F47F2.3 /REP_DB=WormBase Gene ID /WP=CE04605 /TR=Q20542 /GB=AAK39235.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076272(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076272 NCBI Caenorhabditis elegans F47F2.3 (F47F2.3) mRNA, complete cds. 11/11 None
SNAP00000012507 ENSEMBL cdna:SNAP chromosome:CEL140:X:3893975:3895833:-1 11/11 None
GENEFINDER00000012508 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3893975:3895983:-1 11/11 None
F47F2.3 ENSEMBL cdna:known chromosome:CEL140:X:3893975:3895657:-1 gene:F47F2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3893975-3895658(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47F2.3
Entrez Gene 185941 Entrez gene
SwissProt Q20542 EMBL-EBI
WormBase CE35545 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39235 Hypothetical protein F47F2.3 [Caenorhabditis elegans] ref|NP_508673.2| F47F2.3 [Caenorhabditis elegans] 1.0E-167
blast AAK39235 Hypothetical protein F47F2.3 [Caenorhabditis elegans] ref|NP_508673.2| F47F2.3 [Caenorhabditis elegans] 1.0E-153
blast CAE68499 Hypothetical protein CBG14306 [Caenorhabditis briggsae] 1.0E-125
blast CAE68499 Hypothetical protein CBG14306 [Caenorhabditis briggsae] 1.0E-124
blast CAE68499 Hypothetical protein CBG14306 [Caenorhabditis briggsae] 1.0E-123
blast AAB52645 Hypothetical protein F35A5.4 [Caenorhabditis elegans] ref|NP_508657.2| F35A5.4 [Caenorhabditis elegans] 2.0E-16
Sequence
Target Sequence 
>C. ELEGANS:182305_AT
acagtgtactccaagatgtcttcagagatataaccaaatcgttgcttcctttatgaattc
cctaactgcaattgacgtcatggggcaacctgtcaatgaagagccaagaaagagtatcag
attctctccaaagaagggaattgaatgcagagatgaatgtatgccatactgtacacccca
atgtttagatgcatattccattgctgaacacaatgctaaaccgaaagtttgtaaagcggt
gtgcatgccagactgtaccgaagaatgcataacagctccacccctcatggttccgtgtat
tttcgataatgtttgtcactgccctgctggatacgtgagatgcagtgaaatgacatgttg
tatgaagtacaaaaccatggctgtccgatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGTGTACTCCAAGATGTCTTCAG 585 107 186 Antisense
GATATAACCAAATCGTTGCTTCCTT 630 379 212 Antisense
GTTGCTTCCTTTATGAATTCCCTAA 413 437 226 Antisense
ATTCCCTAACTGCAATTGACGTCAT 423 9 242 Antisense
TGACGTCATGGGGCAACCTGTCAAT 583 569 258 Antisense
AATGTATGCCATACTGTACACCCCA 390 163 341 Antisense
GATGCATATTCCATTGCTGAACACA 25 413 373 Antisense
AAAGCGGTGTGCATGCCAGACTGTA 184 125 418 Antisense
GAAGAATGCATAACAGCTCCACCCC 568 339 445 Antisense
CTGCCCTGCTGGATACGTGAGATGC 410 237 504 Antisense
GTACAAAACCATGGCTGTCCGATAT 322 461 552 Antisense
Sequence Source Affymetrix Proprietary Database