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[182302_at]

Description F17A2.10 /REP_DB=WormBase Gene ID /WP=CE15863 /TR=Q19508 /GB=CAA92161.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 02      6grp_cgc > 54      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 4.3
(-2.9)
A 		4.4
(-2.9)
A 		3.8
(-3)
A 		42.9
(3)
A 		39
B 5
(-2.8)
A 		3.8
(-3)
A 		6.1
(-2.6)
A 		36
(3)
A 		32
C 3.3
(-2.9)
A 		2.6
(-3)
A 		3.1
(-3)
A 		65.8
(3)
A 		63
avr 4.2
(-2.9) 		3.6
(-3) 		4.3
(-2.9) 		48.2
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 4
(-2.8)
A 		5.8
(-2.2)
A 		20.8
(3)
A 		3.6
(-2.9)
A 		4.7
(-2.6)
A 		3.4
(-3)
A 		17
B 4.8
(-1.7)
A 		15.3
(3)
A 		1.8
(-3)
A 		5
(-1.6)
A 		8.2
(-0.2)
A 		4.1
(-2)
A 		14
C 2.8
(-2.5)
A 		6.4
(3)
A 		2.5
(-3)
A 		3.8
(-1)
A 		2.5
(-3)
A 		3
(-2.2)
A 		4
avr 3.9
(-2.6) 		9.2
(3) 		8.4
(2.2) 		4.1
(-2.4) 		5.1
(-1.3) 		3.5
(-3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.6
(-2.3)
A 		1
(-3)
A 		1
(-3)
A 		6.3
(3)
A 		5
B 1.6
(-2.4)
A 		0.9
(-3)
A 		1.4
(-2.6)
A 		7.7
(3)
A 		7
C 1.1
(-2.8)
A 		0.7
(-3)
A 		1.1
(-2.8)
A 		11.1
(3)
A 		10
avr 1.4
(-2.6) 		0.9
(-3) 		1.2
(-2.8) 		8.4
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.7
(-3)
A 		2.1
(-0.8)
A 		4.5
(3)
A 		0.9
(-2.7)
A 		1.4
(-1.9)
A 		0.8
(-2.8)
A 		4
B 1.7
(-1.3)
A 		5.1
(3)
A 		0.4
(-3)
A 		1.3
(-1.9)
A 		3.3
(0.7)
A 		1.5
(-1.6)
A 		5
C 1
(-1.2)
A 		1.9
(3)
A 		0.6
(-3)
A 		0.8
(-2.1)
A 		0.8
(-2.1)
A 		1
(-1.2)
A 		1
avr 1.1
(-2.7) 		3
(3) 		1.8
(-0.6) 		1
(-3) 		1.8
(-0.6) 		1.1
(-2.7) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182302_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17021
Sequence Type Exemplar sequence
Representative Public ID F17A2.10 NCBI
Target Description F17A2.10 /REP_DB=WormBase Gene ID /WP=CE15863 /TR=Q19508 /GB=CAA92161.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077664(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077664 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-46) (srd-46) mRNA, complete cds. 11/11 None
GENEFINDER00000014135 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12332016:12333223:1 11/11 None
F17A2.10 ENSEMBL cdna:known chromosome:CEL140:X:12332016:12333223:1 gene:F17A2.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12332015-12333223(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srd-46
Ensembl F17A2.10
Entrez Gene 184606 Entrez gene
SwissProt Q19508 EMBL-EBI
WormBase CE15863 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92161 Hypothetical protein F17A2.10 [Caenorhabditis elegans] ref|NP_510065.1| Serpentine Receptor, class D (delta) family member (srd-46) [Caenorhabditis elegans] sp|Q19508|SRD46_CAEEL Serpentine receptor class delta-46 (Protein srd-46) 1.0E-170
blast CAA92161 Hypothetical protein F17A2.10 [Caenorhabditis elegans] ref|NP_510065.1| Serpentine Receptor, class D (delta) family member (srd-46) [Caenorhabditis elegans] sp|Q19508|SRD46_CAEEL Serpentine receptor class delta-46 (Protein srd-46) 1.0E-162
blast CAA92162 Hypothetical protein F17A2.11 [Caenorhabditis elegans] ref|NP_510066.1| Serpentine Receptor, class D (delta) family member (srd-47) [Caenorhabditis elegans] sp|Q19507|SRD47_CAEEL Serpentine receptor class delta-47 (Protein srd-47) 4.0E-79
blast CAA92160 Hypothetical protein F17A2.9 [Caenorhabditis elegans] ref|NP_510067.1| Serpentine Receptor, class D (delta) family member (srd-48) [Caenorhabditis elegans] sp|O17822|SRD48_CAEEL Serpentine receptor class delta-48 (Protein srd-48) 2.0E-75
blast CAA92162 Hypothetical protein F17A2.11 [Caenorhabditis elegans] ref|NP_510066.1| Serpentine Receptor, class D (delta) family member (srd-47) [Caenorhabditis elegans] sp|Q19507|SRD47_CAEEL Serpentine receptor class delta-47 (Protein srd-47) 2.0E-71
blast CAA92160 Hypothetical protein F17A2.9 [Caenorhabditis elegans] ref|NP_510067.1| Serpentine Receptor, class D (delta) family member (srd-48) [Caenorhabditis elegans] sp|O17822|SRD48_CAEEL Serpentine receptor class delta-48 (Protein srd-48) 9.0E-68
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510065.1 7 10-29,42-64,84-106,127-149,182-204,236-258,268-290
F17A2.10 7 10-29,42-64,84-106,127-149,182-204,236-258,268-290
GENEFINDER00000014135 7 10-29,42-64,99-121,134-156,189-211,259-278,288-310
Sequence
Target Sequence 
>C. ELEGANS:182302_AT
tattattttatcattgtcccctcttttcataaccatgtcagctgaagcatatttaacgat
agaatatcacttacccattgaatatcaagagaagttcagtgctatcaactccaacctcgg
cgatcatactgtcataggatacattgctttggacaacattcctgctcaaattgtgttttg
caccatttgtggatttttcgtgatatttcctttgattatgttttgtttgagaagaaatat
catcttgttcatcaattcaaagttggatttgtcgtcgacaacaatgcggcaacaaaatag
agcgcttataaatggtttgacgcttcaagcttttctcccactcttttgcgtttgccctat
attcatatgctcttttgtggccctcattacaaagacagaaatactacttgaacaatattt
tgtaagcgttgtgttgttgcttcctacatttttcgaacct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTATTTTATCATTGTCCCCTCTT 411 663 399 Antisense
TCCCCTCTTTTCATAACCATGTCAG 694 595 415 Antisense
AGTTCAGTGCTATCAACTCCAACCT 479 61 491 Antisense
ACCTCGGCGATCATACTGTCATAGG 140 87 512 Antisense
TGCTTTGGACAACATTCCTGCTCAA 570 579 543 Antisense
GATTTTTCGTGATATTTCCTTTGAT 455 429 590 Antisense
GTCGTCGACAACAATGCGGCAACAA 401 473 669 Antisense
GTTTGACGCTTCAAGCTTTTCTCCC 600 451 713 Antisense
TCTTTTGCGTTTGCCCTATATTCAT 404 615 740 Antisense
TATTCATATGCTCTTTTGTGGCCCT 462 663 758 Antisense
GTTGCTTCCTACATTTTTCGAACCT 106 439 834 Antisense
Sequence Source Affymetrix Proprietary Database