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[182298_s_at]

Description Y43F8C.6 /REP_DB=WormBase Gene ID /WP=CE21904 /TR=Q9XWN1 /GB=CAA21620.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 21      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 96.6
(-1.2)
A 		99.4
(-1)
A 		57.8
(-3)
A 		185.4
(3)
A 		128
B 89.9
(3)
P 		78
(1.6)
A 		39.5
(-2.8)
A 		37.8
(-3)
A 		52
C 85.9
(1.4)
P 		34.2
(-3)
A 		60.8
(-0.7)
P 		104.6
(3)
P 		70
avr 90.8
(1) 		70.5
(-1.1) 		52.7
(-3) 		109.3
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 50.5
(-3)
A 		76.2
(-0.9)
P 		123.5
(3)
P 		56
(-2.5)
A 		64.3
(-1.9)
A 		55.6
(-2.6)
A 		73
B 58.1
(-1.5)
A 		61.2
(-1)
A 		63.1
(-0.6)
A 		82.4
(3)
A 		50.3
(-3)
A 		66.2
(-0)
A 		32
C 62.9
(1.3)
A 		7.6
(-3)
A 		18.4
(-2.2)
A 		63.9
(1.4)
A 		84
(3)
M 		53.8
(0.6)
A 		76
avr 57.2
(-0.3) 		48.3
(-3) 		68.3
(3) 		67.4
(2.7) 		66.2
(2.4) 		58.5
(0.1) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 35.2
(3)
A 		21.6
(-1.1)
A 		15.1
(-3)
A 		27.1
(0.6)
A 		20
B 28.7
(3)
P 		19.3
(0.3)
A 		9.2
(-2.7)
A 		8
(-3)
A 		21
C 28.4
(3)
P 		9.8
(-3)
A 		21.2
(0.7)
P 		17.6
(-0.5)
P 		19
avr 30.8
(3) 		16.9
(-2.3) 		15.2
(-3) 		17.6
(-2.1) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 9.3
(-3)
A 		27.1
(3)
P 		26.9
(2.9)
P 		14.2
(-1.3)
A 		19.4
(0.4)
A 		13.5
(-1.6)
A 		18
B 20.2
(0.1)
A 		20.4
(0.3)
A 		15.3
(-3)
A 		21.8
(1.1)
A 		20.4
(0.3)
A 		24.7
(3)
A 		9
C 23.3
(2.1)
A 		2.3
(-3)
A 		4.7
(-2.4)
A 		12.9
(-0.4)
A 		27.2
(3)
M 		18
(0.8)
A 		25
avr 17.6
(-1.2) 		16.6
(-2.1) 		15.6
(-3) 		16.3
(-2.4) 		22.3
(3) 		18.7
(-0.2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182298_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13630
Sequence Type Exemplar sequence
Representative Public ID Y43F8C.6 NCBI
Target Description Y43F8C.6 /REP_DB=WormBase Gene ID /WP=CE21904 /TR=Q9XWN1 /GB=CAA21620.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075405(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075405 NCBI Caenorhabditis elegans Y43F8C.6 (Y43F8C.6) mRNA, complete cds. 11/11 None
SNAP00000039610 ENSEMBL cdna:SNAP chromosome:CEL140:V:19627164:19646601:-1 9/11 None
GENEFINDER00000039626 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19636823:19643434:-1 9/11 None
Y43F8C.6 ENSEMBL cdna:known chromosome:CEL140:V:19635634:19643480:-1 gene:Y43F8C.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19635780-19643434(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43F8C.6
Entrez Gene 180285 Entrez gene
SwissProt Q9XWN1 EMBL-EBI
WormBase CE34120 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6418 tRNA aminoacylation for protein translation inferred from electronic annotation QuickGO AmiGO
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
4812 tRNA ligase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21620 Hypothetical protein Y43F8C.6 [Caenorhabditis elegans] ref|NP_507806.2| Y43F8C.6 [Caenorhabditis elegans] 1.0E-154
blast CAA21620 Hypothetical protein Y43F8C.6 [Caenorhabditis elegans] ref|NP_507806.2| Y43F8C.6 [Caenorhabditis elegans] 1.0E-139
blast CAA21620 Hypothetical protein Y43F8C.6 [Caenorhabditis elegans] ref|NP_507806.2| Y43F8C.6 [Caenorhabditis elegans] 1.0E-123
blast CAA21609 Hypothetical protein Y43F8C.5 [Caenorhabditis elegans] ref|NP_507805.1| Y43F8C.5 [Caenorhabditis elegans] 1.0E-115
blast CAA21610 Hypothetical protein Y43F8C.7 [Caenorhabditis elegans] ref|NP_507807.1| Y43F8C.7 [Caenorhabditis elegans] 1.0E-109
blast CAE61744 Hypothetical protein CBG05696 [Caenorhabditis briggsae] 8.0E-35
blast CAE61744 Hypothetical protein CBG05696 [Caenorhabditis briggsae] 9.0E-35
blast AAO41182 CG33695-PE, isoform E [Drosophila melanogaster] gb|AAN10776.1| CG33695-PA, isoform A [Drosophila melanogaster] ref|NP_788030.1| CG32955-PG, isoform G [Drosophila melanogaster] ref|NP_788029.1| CG32955-PF, isoform F [Drosophila melanogaster] 5.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000039610 1 583-605
Sequence
Target Sequence 
>C. ELEGANS:182298_S_AT
ttatcaagcttctacgtcatcaggaccactaattgccacgtcttcacagaattccaattc
atttcaacaatatcaacgggggggtcccggcggctcctcggcaatgagctccggagctct
tgtgatgaattcgagcaataatggagctgctaataataatatgatggcaatggatcaacc
ggcgccggtcaacttggcggcaaaggtggccgaagttttcctgaccgccggccacgcttt
tcaaaaattgggtgatctgacactacaattacatacgacaactgatgcagacgaaagtaa
atggtcagagaaagaagcagtaatcccgactcgatatacggtagctccaagctcctcaac
atctacagtaatcctgaatagtcactcatcacccggcggcggtggaatgcctcatcttca
atcacaaaatctatcggcttcatctgcaccgcccccgcttccacgtggtgtcgtaccaac
aactacagtaacccgggtggtcgcaccacacactttacttcatcagggaccacccataaa
ggatttgccgccagcgtcaagcctaattccaacaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATCAAGCTTCTACGTCATCAGGA 58 673 273 Antisense
GTCATCAGGACCACTAATTGCCACG 658 465 288 Antisense
TTGCCACGTCTTCACAGAATTCCAA 313 701 305 Antisense
AGCTCCGGAGCTCTTGTGATGAATT 245 81 379 Antisense
GATGGCAATGGATCAACCGGCGCCG 265 407 435 Antisense
GATATACGGTAGCTCCAAGCTCCTC 132 423 605 Antisense
TCCTGAATAGTCACTCATCACCCGG 282 593 644 Antisense
GTGGAATGCCTCATCTTCAATCACA 557 491 674 Antisense
CACCACACACTTTACTTCATCAGGG 33 203 776 Antisense
GACCACCCATAAAGGATTTGCCGCC 467 381 800 Antisense
CAGCGTCAAGCCTAATTCCAACAAG 187 203 824 Antisense
Sequence Source Affymetrix Proprietary Database