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[182297_at]

Description T14E8.2 /REP_DB=WormBase Gene ID /WP=CE04957 /TR=Q22488 /GB=AAA82384.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 37      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 9.9
(-0.6)
A 		14.4
(3)
A 		12.7
(1.6)
A 		7
(-3)
A 		7
B 39
(2.5)
A 		41.6
(3)
A 		8
(-3)
A 		11.4
(-2.4)
A 		34
C 51.7
(3)
A 		22
(-0.6)
A 		2.7
(-3)
A 		47.4
(2.5)
A 		49
avr 33.5
(3) 		26
(1.2) 		7.8
(-3) 		21.9
(0.3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 32.5
(3)
A 		29.6
(2.4)
A 		6.9
(-2.2)
A 		10.6
(-1.4)
A 		2.8
(-3)
A 		5.3
(-2.5)
A 		30
B 73.3
(3)
A 		12
(-2.5)
A 		35.8
(-0.3)
A 		14.9
(-2.2)
A 		22.8
(-1.5)
A 		6.1
(-3)
A 		67
C 26.1
(-0.5)
A 		56.3
(3)
A 		10.6
(-2.3)
A 		48.5
(2.1)
A 		4.6
(-3)
A 		6.4
(-2.8)
A 		52
avr 44
(3) 		32.6
(1.2) 		17.8
(-1.1) 		24.7
(-0) 		10.1
(-2.3) 		5.9
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 3.6
(3)
A 		3.1
(1.8)
A 		3.3
(2.3)
A 		1
(-3)
A 		3
B 12.4
(3)
A 		10.3
(1.8)
A 		1.9
(-3)
A 		2.4
(-2.7)
A 		11
C 17.1
(3)
A 		6.3
(-1)
A 		1
(-3)
A 		8
(-0.4)
A 		16
avr 11
(3) 		6.6
(0) 		2.1
(-3) 		3.8
(-1.9) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 6
(0.2)
A 		10.5
(3)
A 		1.5
(-2.6)
A 		2.7
(-1.8)
A 		0.8
(-3)
A 		1.3
(-2.7)
A 		10
B 25.5
(3)
A 		4
(-2.6)
A 		8.7
(-1.3)
A 		4
(-2.6)
A 		9.3
(-1.2)
A 		2.3
(-3)
A 		23
C 9.7
(0.1)
A 		17.2
(3)
A 		2.7
(-2.5)
A 		9.8
(0.2)
A 		1.5
(-3)
A 		2.1
(-2.8)
A 		16
avr 13.7
(3) 		10.6
(1.4) 		4.3
(-1.8) 		5.5
(-1.2) 		3.9
(-2) 		1.9
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182297_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16857
Sequence Type Exemplar sequence
Representative Public ID T14E8.2 NCBI
Target Description T14E8.2 /REP_DB=WormBase Gene ID /WP=CE04957 /TR=Q22488 /GB=AAA82384.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076702(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076702 NCBI Caenorhabditis elegans T14E8.2 (T14E8.2) mRNA, complete cds. 11/11 None
SNAP00000007182 ENSEMBL cdna:SNAP chromosome:CEL140:X:6542950:6543938:1 9/11 None
GENEFINDER00000007190 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6542950:6543938:1 11/11 None
T14E8.2 ENSEMBL cdna:known chromosome:CEL140:X:6541792:6543938:1 gene:T14E8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6541791-6543938(+) 91.67 100.0
Public Domain and Genome References
Gene Title
Ensembl T14E8.2
Entrez Gene 188498 Entrez gene
SwissProt Q22488 EMBL-EBI
WormBase CE04957 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82384 Hypothetical protein T14E8.2 [Caenorhabditis elegans] ref|NP_509103.1| T14E8.2 [Caenorhabditis elegans] 1.0E-150
blast AAA82384 Hypothetical protein T14E8.2 [Caenorhabditis elegans] ref|NP_509103.1| T14E8.2 [Caenorhabditis elegans] 1.0E-108
blast AAA82384 Hypothetical protein T14E8.2 [Caenorhabditis elegans] ref|NP_509103.1| T14E8.2 [Caenorhabditis elegans] 1.0E-83
blast CAE65751 Hypothetical protein CBG10838 [Caenorhabditis briggsae] 3.0E-50
blast CAE65751 Hypothetical protein CBG10838 [Caenorhabditis briggsae] 5.0E-50
blast CAE65751 Hypothetical protein CBG10838 [Caenorhabditis briggsae] 1.0E-30
Sequence
Target Sequence 
>C. ELEGANS:182297_AT
caaaagagccgaacaagtccgtccgccactgttatctacaagcccttttatgttatggaa
aaatgatccaaaatgcatgattcctggacgtgatatgatggcatgtcccaagaaagaccc
gaacgaccctctggaaaagttggtctgcattgaaccgtcggcgctctgtgacgatcacag
agattgccatggcgcagaagacgaagatcctcacttttgcatgttcaaaaaactggaaga
tgcagcgatgagacgagttcaagcggagattcttgtgctagttcaaaacaaccgcaagtt
gcaacccggagttgttgttcatattcccgataagcctgacacaggaatagtagaaccgtt
gcgtcctggagtgttcaaagtggaaggattgggaccacttgcaaaatcgaaaatgtatat
gaatgagaaggacgatgacgatgtgaataagagtgtagaagaaagcgatgaggaggaaga
aaatcaggaatcagaagagcaagaagacaatgataaagctgaaaaagaagaggaacggcg
aaggcaggaggaggcagctaggcaacattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAAGAGCCGAACAAGTCCGTCCG 226 189 336 Antisense
CCACTGTTATCTACAAGCCCTTTTA 424 269 361 Antisense
GGCATGTCCCAAGAAAGACCCGAAC 215 511 435 Antisense
AGTTGGTCTGCATTGAACCGTCGGC 130 65 473 Antisense
CGATCACAGAGATTGCCATGGCGCA 331 249 507 Antisense
GACGAAGATCCTCACTTTTGCATGT 413 379 535 Antisense
ACCGCAAGTTGCAACCCGGAGTTGT 277 85 626 Antisense
CCGGAGTTGTTGTTCATATTCCCGA 523 265 641 Antisense
ATATTCCCGATAAGCCTGACACAGG 656 17 656 Antisense
ATAGTAGAACCGTTGCGTCCTGGAG 54 23 682 Antisense
GGAGGAGGCAGCTAGGCAACATTCA 142 515 882 Antisense
Sequence Source Affymetrix Proprietary Database