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[182295_at]

Description F40E3.6 /REP_DB=WormBase Gene ID /WP=CE10168 /TR=O01551 /GB=AAC24295.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 03      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 36
(0.3)
A 		15
(-1.8)
A 		2.7
(-3)
A 		64.1
(3)
P 		61
B 6.5
(-2.8)
A 		6.5
(-2.8)
A 		3.9
(-3)
A 		71.5
(3)
A 		68
C 8.8
(-2.5)
A 		1.7
(-3)
A 		2.1
(-3)
A 		95.5
(3)
A 		94
avr 17.1
(-1.9) 		7.7
(-2.6) 		2.9
(-3) 		77
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 41
(3)
A 		5.5
(-2.9)
A 		17.7
(-0.8)
A 		4.6
(-3)
A 		26.8
(0.7)
A 		36
(2.2)
A 		36
B 3.7
(-2.9)
A 		7.4
(-1.4)
A 		18.4
(3)
A 		4.5
(-2.6)
A 		15.3
(1.8)
A 		3.5
(-3)
A 		15
C 4.2
(-3)
A 		17.2
(3)
A 		12.3
(0.7)
A 		7.4
(-1.5)
A 		4.3
(-3)
A 		6.4
(-2)
A 		13
avr 16.3
(3) 		10
(-0.5) 		16.1
(2.9) 		5.5
(-3) 		15.5
(2.6) 		15.3
(2.4) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 13.1
(3)
A 		3.3
(-1.7)
A 		0.7
(-3)
A 		9.4
(1.2)
P 		12
B 2.1
(-2.5)
A 		1.6
(-2.7)
A 		0.9
(-3)
A 		15.2
(3)
A 		14
C 2.9
(-2.1)
A 		0.5
(-3)
A 		0.7
(-2.9)
A 		16.1
(3)
A 		16
avr 6
(-0.6) 		1.8
(-2.5) 		0.8
(-3) 		13.6
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 7.6
(2.1)
A 		2
(-2.4)
A 		3.8
(-0.9)
A 		1.2
(-3)
A 		8.1
(2.4)
A 		8.8
(3)
A 		8
B 1.3
(-2.9)
A 		2.5
(-1.4)
A 		4.5
(1)
A 		1.2
(-3)
A 		6.2
(3)
A 		1.3
(-2.9)
A 		5
C 1.6
(-2.7)
A 		5.2
(3)
A 		3.1
(-0.3)
A 		1.5
(-2.8)
A 		1.4
(-3)
A 		2.2
(-1.7)
A 		4
avr 3.5
(0.4) 		3.2
(-0.1) 		3.8
(0.8) 		1.3
(-3) 		5.2
(3) 		4.1
(1.3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182295_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.199
Sequence Type Exemplar sequence
Representative Public ID F40E3.6 NCBI
Target Description F40E3.6 /REP_DB=WormBase Gene ID /WP=CE10168 /TR=O01551 /GB=AAC24295.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058619(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058619 NCBI Caenorhabditis elegans F40E3.6 (F40E3.6) mRNA, complete cds. 11/11 None
GENEFINDER00000025936 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2650738:2651722:-1 9/11 None
F40E3.6 ENSEMBL cdna:known chromosome:CEL140:I:2650738:2651712:-1 gene:F40E3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2650737-2651712(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F40E3.6
Entrez Gene 353381 Entrez gene
SwissProt O01551 EMBL-EBI
WormBase CE10168 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24295 Hypothetical protein F40E3.6 [Caenorhabditis elegans] ref|NP_491020.1| F40E3.6 [Caenorhabditis elegans] 1.0E-137
blast AAC24295 Hypothetical protein F40E3.6 [Caenorhabditis elegans] ref|NP_491020.1| F40E3.6 [Caenorhabditis elegans] 7.0E-96
blast AAF39853 Hypothetical protein F59H6.2 [Caenorhabditis elegans] ref|NP_494153.1| F59H6.2 [Caenorhabditis elegans] 4.0E-50
blast AAF39853 Hypothetical protein F59H6.2 [Caenorhabditis elegans] ref|NP_494153.1| F59H6.2 [Caenorhabditis elegans] 2.0E-37
blast AAB66196 Hypothetical protein K09F6.6 [Caenorhabditis elegans] ref|NP_494225.2| K09F6.6 [Caenorhabditis elegans] 2.0E-23
blast AAB66196 Hypothetical protein K09F6.6 [Caenorhabditis elegans] ref|NP_494225.2| K09F6.6 [Caenorhabditis elegans] 4.0E-23
Sequence
Target Sequence 
>C. ELEGANS:182295_AT
acattcaatacagacggttcccgaaaaagagggaacattcgcggagaaatttggcctgtt
ttccttgctccgaatgacattgtcgctgaacgatccagttttcaagagtatcgttccgaa
atggtgcttatgtctgcgatcatgctctcaactagctcattgaaaaaggcagacttttct
tctctctttgagagaatgcgattggagttagaatcgacgaatacagaccccctcacaatc
aacttggaaggtttcgaatacaaaatcagactggaaatttgttacagtgttttagacatg
gatgccattaaaaaaatccatggagtaccagtttggcaatcgtacaattcgtgctctcga
tgcttaaataagttctcaatcaagcgtttacagaatatcctcaagaacgcgacaactcca
aaaggacgatgttcagtgagtttagttgagtcagatgttcttagctcacgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATTCAATACAGACGGTTCCCGAA 381 103 193 Antisense
ATTCGCGGAGAAATTTGGCCTGTTT 511 9 229 Antisense
TGTTTTCCTTGCTCCGAATGACATT 455 561 249 Antisense
GACATTGTCGCTGAACGATCCAGTT 409 371 268 Antisense
CGTTCCGAAATGGTGCTTATGTCTG 116 247 304 Antisense
TTATGTCTGCGATCATGCTCTCAAC 243 681 320 Antisense
AAAGGCAGACTTTTCTTCTCTCTTT 489 121 357 Antisense
TAGAATCGACGAATACAGACCCCCT 435 651 401 Antisense
GTACAATTCGTGCTCTCGATGCTTA 476 461 534 Antisense
ATATCCTCAAGAACGCGACAACTCC 308 21 587 Antisense
GAGTCAGATGTTCTTAGCTCACGAA 13 401 640 Antisense
Sequence Source Affymetrix Proprietary Database