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[182293_at]

Description F41C6.7 /REP_DB=WormBase Gene ID /WP=CE04544 /TR=Q20272 /GB=AAA80448.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 2.3
(-3)
A 		24.9
(-0.9)
A 		8.1
(-2.5)
A 		67.9
(3)
A 		66
B 16.4
(-3)
A 		71.7
(1.6)
A 		34.2
(-1.5)
A 		89.3
(3)
A 		73
C 37.2
(-1.6)
A 		14.1
(-3)
A 		37
(-1.6)
A 		113
(3)
A 		99
avr 18.6
(-3) 		36.9
(-1.5) 		26.4
(-2.3) 		90.1
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 7.4
(-2.7)
A 		4.2
(-3)
A 		48.3
(1.4)
A 		63.8
(3)
A 		46.8
(1.3)
A 		19.5
(-1.5)
A 		60
B 6.1
(-3)
A 		19.8
(-1.6)
A 		49.1
(1.5)
A 		16.3
(-1.9)
A 		39.1
(0.5)
A 		63.1
(3)
A 		57
C 6
(-3)
A 		11.2
(-2.4)
A 		8.9
(-2.7)
A 		7.8
(-2.8)
A 		27.4
(-0.6)
A 		60.1
(3)
A 		54
avr 6.5
(-3) 		11.7
(-2.2) 		35.4
(1.2) 		29.3
(0.3) 		37.8
(1.6) 		47.6
(3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 0.8
(-3)
A 		5.4
(0)
A 		2.1
(-2.1)
A 		9.9
(3)
A 		9
B 5.2
(-3)
A 		17.7
(2.4)
A 		7.9
(-1.8)
A 		19
(3)
A 		14
C 12.3
(0.3)
A 		4.1
(-3)
A 		12.9
(0.5)
A 		19
(3)
A 		15
avr 6.1
(-3) 		9.1
(-1.2) 		7.6
(-2.1) 		16
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 1.4
(-3)
A 		1.5
(-3)
A 		10.5
(0.7)
A 		16.2
(3)
A 		14.1
(2.1)
A 		4.7
(-1.7)
A 		15
B 2.1
(-3)
A 		6.6
(-1.7)
A 		11.9
(-0.3)
A 		4.3
(-2.4)
A 		15.9
(0.9)
A 		23.5
(3)
A 		21
C 2.2
(-2.8)
A 		3.4
(-2.4)
A 		2.3
(-2.8)
A 		1.6
(-3)
A 		8.9
(-0.6)
A 		20.1
(3)
A 		19
avr 1.9
(-3) 		3.8
(-2.2) 		8.2
(-0.3) 		7.4
(-0.7) 		13
(1.7) 		16.1
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182293_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16537
Sequence Type Exemplar sequence
Representative Public ID F41C6.7 NCBI
Target Description F41C6.7 /REP_DB=WormBase Gene ID /WP=CE04544 /TR=Q20272 /GB=AAA80448.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076763(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076763 NCBI Caenorhabditis elegans F41C6.7 (F41C6.7) mRNA, complete cds. 11/11 None
GENEFINDER00000012730 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6882445:6884673:-1 11/11 None
F41C6.7 ENSEMBL cdna:known chromosome:CEL140:X:6882445:6885229:-1 gene:F41C6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6882444-6885225(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41C6.7
Entrez Gene 185601 Entrez gene
SwissProt Q20272 EMBL-EBI
WormBase CE35533 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6812 cation transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8324 cation transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA80448 Hypothetical protein F41C6.7 [Caenorhabditis elegans] ref|NP_509164.2| F41C6.7 [Caenorhabditis elegans] 0.0
blast AAA80448 Hypothetical protein F41C6.7 [Caenorhabditis elegans] ref|NP_509164.2| F41C6.7 [Caenorhabditis elegans] 1.0E-175
blast CAE65813 Hypothetical protein CBG10923 [Caenorhabditis briggsae] 1.0E-124
blast AAA81718 Hypothetical protein PDB1.1 [Caenorhabditis elegans] ref|NP_509279.2| PDB1.1 [Caenorhabditis elegans] 9.0E-18
blast AAA81718 Hypothetical protein PDB1.1 [Caenorhabditis elegans] ref|NP_509279.2| PDB1.1 [Caenorhabditis elegans] 1.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR002524 EMBL-EBI Cation efflux protein 8.6E-13
Pfam IPR002524 EMBL-EBI Cation efflux protein 8.6E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509164.2 6 93-112,122-144,165-184,199-221,241-258,263-285
F41C6.7 6 93-112,122-144,165-184,199-221,241-258,263-285
GENEFINDER00000012730 6 40-59,69-91,112-131,146-168,188-205,210-232
Sequence
Target Sequence 
>C. ELEGANS:182293_AT
gagtcaacaactaatctcaccgcttccgtggtcatgatgacactagcttttgtcaacttc
attcaaagttttgacgcactaattaccggaaacttaaatcctgaattcggaactcctcat
attatcgtcgttatcgtcaacattgttgtgaagctgtttttgttttttgtatgccttatt
aaacgagagaacaaccaaattcgggttttgatgagggaccagcttacagatgtattgaca
aactcgattgctcttgttgctgtgtgcattgcccattcgtattggaagataatttcgagt
aaccagtccatgtttactgtgatagttggatatataacttatcatgttggtaacaaagca
attgtagagatatattgtgaagtggaaaaccaacaaaatcgagaagaaattcaatcaaaa
ttcagtgcggacgaggtattggcggtttatctactaccagtggaggagagcaagaacgtg
catttgctttctgtaaaacaacctgacgtcgattgctctaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTCAACAACTAATCTCACCGCTT 204 399 625 Antisense
ACCGCTTCCGTGGTCATGATGACAC 285 89 643 Antisense
ACACTAGCTTTTGTCAACTTCATTC 702 109 664 Antisense
AAATCCTGAATTCGGAACTCCTCAT 654 117 720 Antisense
GGAACTCCTCATATTATCGTCGTTA 428 529 733 Antisense
GATGAGGGACCAGCTTACAGATGTA 423 411 834 Antisense
ACTCGATTGCTCTTGTTGCTGTGTG 2 99 866 Antisense
TGTGCATTGCCCATTCGTATTGGAA 698 555 887 Antisense
GCGGACGAGGTATTGGCGGTTTATC 513 287 1051 Antisense
GGCGGTTTATCTACTACCAGTGGAG 388 541 1065 Antisense
AACAACCTGACGTCGATTGCTCTAA 507 133 1121 Antisense
Sequence Source Affymetrix Proprietary Database