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[182291_s_at]

Description F52D2.1 /REP_DB=WormBase Gene ID /WP=CE04622 /TR=Q9TXM9 /GB=AAC78152.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 12      6grp_total > 31      4grp_total > 12      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 36.6
(-2.3)
P 		32.3
(-3)
A 		41.3
(-1.5)
A 		67.4
(3)
P 		35
B 37.2
(0.4)
A 		50.1
(1.8)
P 		7.8
(-3)
A 		60.2
(3)
P 		52
C 74.9
(0.2)
P 		34.3
(-3)
A 		36.1
(-2.9)
P 		109.4
(3)
P 		75
avr 49.6
(-0.5) 		38.9
(-1.8) 		28.4
(-3) 		79
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 46.8
(1.2)
P 		53.4
(1.8)
P 		67.2
(3)
P 		44
(0.9)
M 		35.5
(0.1)
P 		0.8
(-3)
A 		66
B 43.8
(0.2)
P 		42
(-0.1)
P 		64.3
(3)
P 		47.1
(0.6)
P 		58.4
(2.2)
P 		20.8
(-3)
A 		44
C 36.8
(-1.3)
A 		80.1
(3)
P 		75.9
(2.6)
P 		74.4
(2.4)
P 		49.1
(-0.1)
A 		19.2
(-3)
A 		61
avr 42.5
(0.1) 		58.5
(1.9) 		69.1
(3) 		55.2
(1.5) 		47.7
(0.7) 		13.6
(-3) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 13.3
(3)
P 		7
(-3)
A 		10.8
(0.6)
A 		9.9
(-0.2)
P 		6
B 11.9
(2.5)
A 		12.4
(2.8)
P 		1.8
(-3)
A 		12.8
(3)
P 		11
C 24.8
(3)
P 		9.9
(-3)
A 		12.6
(-1.9)
P 		18.5
(0.5)
P 		15
avr 16.7
(3) 		9.8
(-2) 		8.4
(-3) 		13.7
(0.8) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 8.6
(-0.3)
P 		19
(3)
P 		14.6
(1.6)
P 		11.2
(0.5)
M 		10.7
(0.4)
P 		0.2
(-3)
A 		19
B 15.2
(-0.2)
P 		14
(-0.7)
P 		15.6
(-0.1)
P 		12.5
(-1.2)
P 		23.7
(3)
P 		7.8
(-3)
A 		16
C 13.6
(-0.6)
A 		24.4
(3)
P 		19.3
(1.3)
P 		15
(-0.1)
P 		15.9
(0.2)
A 		6.4
(-3)
A 		18
avr 12.5
(0.2) 		19.1
(3) 		16.5
(1.9) 		12.9
(0.4) 		16.8
(2) 		4.8
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182291_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18552
Sequence Type Exemplar sequence
Representative Public ID F52D2.1 NCBI
Target Description F52D2.1 /REP_DB=WormBase Gene ID /WP=CE04622 /TR=Q9TXM9 /GB=AAC78152.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075954(11), NM_075957(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075954 NCBI Caenorhabditis elegans Y59E1A.1 (Y59E1A.1) mRNA, complete cds. 11/11 A 
NM_075957 NCBI Caenorhabditis elegans F52D2.1 (F52D2.1) mRNA, complete cds. 11/11 None
GENEFINDER00000016868 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1948717:1950722:-1 11/11 None
GENEFINDER00000009498 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1938038:1942193:-1 11/11 None
Y59E1A.1 ENSEMBL cdna:known chromosome:CEL140:X:1937941:1942193:-1 gene:Y59E1A.1 11/11 A 
F52D2.1 ENSEMBL cdna:known chromosome:CEL140:X:1948602:1950722:-1 gene:F52D2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1948601-1950722(-) 100.0 100.0
chrX:1940629-1942193(-) 93.24 93.24
Public Domain and Genome References
Gene Title

Ensembl Y59E1A.1
F52D2.1
Entrez Gene 186102 Entrez gene
190408 Entrez gene
SwissProt Q9TXM9 EMBL-EBI
Q968Z2 EMBL-EBI
WormBase CE04622 Wormbase
CE32540 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39347 Hypothetical protein Y59E1A.1 [Caenorhabditis elegans] ref|NP_508355.2| Y59E1A.1 [Caenorhabditis elegans] 0.0
blast AAC78152 Hypothetical protein F52D2.1 [Caenorhabditis elegans] ref|NP_508358.1| F52D2.1 [Caenorhabditis elegans] 0.0
blast AAC78152 Hypothetical protein F52D2.1 [Caenorhabditis elegans] ref|NP_508358.1| F52D2.1 [Caenorhabditis elegans] 1.0E-173
blast AAK39347 Hypothetical protein Y59E1A.1 [Caenorhabditis elegans] ref|NP_508355.2| Y59E1A.1 [Caenorhabditis elegans] 1.0E-173
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.1E-57
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.4E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508355.2 1 446-465
Y59E1A.1 1 446-465
Sequence
Target Sequence 
>C. ELEGANS:182291_S_AT
gaatgtttcccagtggatgcagtcgaaatttggaatttctcattcaatgatgtcgtttct
tttctatcttattttgatgataaaacactgaaatcaataaaattgaatcaaaatgaacca
atagaacaatttgagccaataacttatttggaccagtggacaaatgcaaaacattttggc
ctcaaagctacaaattctaatgttgacagtgaaataattaaaaatctgtttcattttcca
catttctgtgtctacaaaataaccgatttcccaacacaacttgcagttaaaataagagat
aatctaatgagaagaagcacattccaacagtgcactttatcagtcaacaaattgaccttg
aacccaatcgaaattgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGTTTCCCAGTGGATGCAGTCG 498 331 505 Antisense
TTCAATGATGTCGTTTCTTTTCTAT 517 685 547 Antisense
TGTCGTTTCTTTTCTATCTTATTTT 48 559 555 Antisense
GAGCCAATAACTTATTTGGACCAGT 662 383 637 Antisense
TGGCCTCAAAGCTACAAATTCTAAT 676 543 681 Antisense
AAATCTGTTTCATTTTCCACATTTC 693 117 726 Antisense
TCCACATTTCTGTGTCTACAAAATA 198 589 741 Antisense
ATTTCCCAACACAACTTGCAGTTAA 297 15 770 Antisense
GAAGCACATTCCAACAGTGCACTTT 391 341 818 Antisense
AACAGTGCACTTTATCAGTCAACAA 428 137 830 Antisense
TGACCTTGAACCCAATCGAAATTGC 404 541 857 Antisense
Sequence Source Affymetrix Proprietary Database