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[182290_at]

Description Y80D3A.4 /REP_DB=WormBase Gene ID /WP=CE24676 /TR=Q9U1R0 /GB=CAB60441.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 02      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_highest_nonorm > 80      6grp_total > 14      4grp_total > 21      6grp_highest_sub > De      6grp_cgc > 30      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 254
1 2 3 4 range
A 228
(1.7)
P 		125.9
(-3)
P 		141.7
(-2.3)
P 		254.9
(3)
P 		129
B 235.6
(0.9)
P 		235
(0.9)
P 		72.2
(-3)
P 		325.7
(3)
P 		254
C 225.7
(0)
P 		195.8
(-1)
P 		142.2
(-3)
P 		306.6
(3)
P 		164
avr 229.8
(0.8) 		185.6
(-0.7) 		118.7
(-3) 		295.7
(3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 248.3
(3)
P 		172.1
(-1)
P 		188.2
(-0.2)
P 		159.7
(-1.6)
P 		154.1
(-1.9)
P 		133.9
(-3)
P 		114
B 194
(1.1)
P 		212.2
(3)
P 		205
(2.2)
P 		200.5
(1.8)
P 		154.8
(-3)
P 		182.2
(-0.1)
P 		57
C 242.4
(1.7)
P 		271.5
(3)
P 		164.6
(-1.7)
P 		229.6
(1.2)
P 		134.1
(-3)
P 		185.4
(-0.8)
P 		137
avr 228.2
(3) 		218.6
(2.3) 		185.9
(-0.2) 		196.6
(0.6) 		147.7
(-3) 		167.2
(-1.5) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 83
(3)
P 		27.3
(-3)
P 		37
(-2)
P 		37.3
(-1.9)
P 		56
B 75.1
(3)
P 		58
(1.2)
P 		16.7
(-3)
P 		69.4
(2.4)
P 		58
C 74.7
(3)
P 		56.3
(-1.4)
P 		49.6
(-3)
P 		51.7
(-2.5)
P 		25
avr 77.6
(3) 		47.2
(-1.2) 		34.4
(-3) 		52.8
(-0.4) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 45.8
(-0.2)
P 		61.2
(3)
P 		41
(-1.2)
P 		40.5
(-1.3)
P 		46.5
(-0.1)
P 		32.6
(-3)
P 		29
B 67.5
(2.1)
P 		70.6
(3)
P 		49.8
(-3)
P 		53.1
(-2)
P 		62.9
(0.8)
P 		67.9
(2.2)
P 		21
C 89.9
(3)
P 		82.8
(2.1)
P 		41.9
(-3)
P 		46.2
(-2.5)
P 		43.4
(-2.8)
P 		62.1
(-0.5)
P 		48
avr 67.7
(2.2) 		71.5
(3) 		44.2
(-3) 		46.6
(-2.5) 		50.9
(-1.5) 		54.2
(-0.8) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182290_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14043
Sequence Type Exemplar sequence
Representative Public ID Y80D3A.4 NCBI
Target Description Y80D3A.4 /REP_DB=WormBase Gene ID /WP=CE24676 /TR=Q9U1R0 /GB=CAB60441.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075285(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075285 NCBI Caenorhabditis elegans Y80D3A.4 (Y80D3A.4) mRNA, complete cds. 11/11 None
GENEFINDER00000017379 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18897890:18903099:-1 11/11 None
Y80D3A.4 ENSEMBL cdna:known chromosome:CEL140:V:18897890:18903099:-1 gene:Y80D3A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18897889-18903099(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol nhr-243
Ensembl Y80D3A.4
Entrez Gene 190741 Entrez gene
SwissProt Q9U1R0 EMBL-EBI
WormBase CE36624 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60441 Hypothetical protein Y80D3A.4 [Caenorhabditis elegans] ref|NP_507686.2| Y80D3A.4 [Caenorhabditis elegans] 0.0
blast CAE56186 Hypothetical protein CBG23808 [Caenorhabditis briggsae] 3.0E-92
blast CAE17952 Hypothetical protein Y17D7A.3b [Caenorhabditis elegans] ref|NP_001024220.1| Nuclear Hormone Receptor family member (nhr-65) [Caenorhabditis elegans] 2.0E-88
blast CAE56186 Hypothetical protein CBG23808 [Caenorhabditis briggsae] 5.0E-85
blast CAE17952 Hypothetical protein Y17D7A.3b [Caenorhabditis elegans] ref|NP_001024220.1| Nuclear Hormone Receptor family member (nhr-65) [Caenorhabditis elegans] 2.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 0.022
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 3.5E-11
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 0.022
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 4.7E-6
Sequence
Target Sequence 
>C. ELEGANS:182290_AT
gccacgtggttttcgtatttcgacgatttccagcgaatgtctaatgatgttcagctaaaa
atccttgccgccacgtggcatgtatggtctcgtctggataagttggcaattacagcgatg
gggcgacggatgaagatgtgctgcggtgattgtgtaatgttttcgcataaaaatgagtat
tcaatgatggatatgaagaatatggagttggatttgacgtggtgctcacgattaaccaat
cagcaaatgcaattcttctacgacacgtcagaaaaccacataacctacaaatttgcccaa
gaaatgatgaatttgaacccagatgacgtggagctgtcctatatgctggctcatttggtg
ctcggacacgcgggacgccgatttcgaggcgaaattcaagaaaattgcgagaaaattatg
gaaaaattggcgaataatctgcatgattactatgttaatgtgaaggaaacgccgagatat
tcagttcgcctggcgcagattttgagaattatccggaaaattaaggaagaagtgctccaa
atccgctcaaaactccaattggccaaggttttcgacgttcacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCACGTGGTTTTCGTATTTCGACG 578 277 781 Antisense
TTCAGCTAAAAATCCTTGCCGCCAC 144 687 830 Antisense
GCCACGTGGCATGTATGGTCTCGTC 577 279 850 Antisense
GATGTGCTGCGGTGATTGTGTAATG 475 409 915 Antisense
AATGCAATTCTTCTACGACACGTCA 554 165 1026 Antisense
GAACCCAGATGACGTGGAGCTGTCC 264 347 1095 Antisense
GGAGCTGTCCTATATGCTGGCTCAT 671 519 1110 Antisense
AACGCCGAGATATTCAGTTCGCCTG 683 145 1248 Antisense
GTTCGCCTGGCGCAGATTTTGAGAA 60 441 1264 Antisense
ATCCGCTCAAAACTCCAATTGGCCA 480 37 1321 Antisense
TGGCCAAGGTTTTCGACGTTCACAC 646 543 1340 Antisense
Sequence Source Affymetrix Proprietary Database