[Home] | [Total List]

[182289_s_at]

Description F18E9.7 /REP_DB=WormBase Gene ID /WP=CE02664 /TR=Q19570 /GB=AAA68812.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 32      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 3.2
(-3)
A 		6.8
(-2.4)
A 		40.2
(3)
A 		12.1
(-1.6)
A 		37
B 5.3
(-3)
A 		43.5
(3)
A 		23.2
(-0.2)
A 		31.8
(1.2)
A 		38
C 4.4
(-3)
A 		5.3
(-2.9)
A 		23.1
(-0.5)
A 		48.9
(3)
A 		45
avr 4.3
(-3) 		18.5
(0.2) 		28.8
(2.5) 		30.9
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 11.3
(-1.4)
A 		11.9
(-1.2)
A 		2.7
(-3)
A 		31.7
(2.6)
A 		3.6
(-2.8)
A 		34
(3)
A 		31
B 6.2
(-2.1)
A 		7.1
(-1.8)
A 		14.7
(0.5)
A 		3.1
(-3)
A 		14.6
(0.5)
A 		23
(3)
A 		20
C 17.4
(-1.5)
A 		36.9
(0.7)
A 		9
(-2.4)
A 		57.7
(3)
A 		4.2
(-2.9)
A 		3.7
(-3)
A 		54
avr 11.6
(-1.9) 		18.6
(-0.1) 		8.8
(-2.7) 		30.8
(3) 		7.5
(-3) 		20.2
(0.3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.2
(-3)
A 		1.5
(-2.8)
A 		10.5
(3)
A 		1.8
(-2.6)
A 		9
B 1.7
(-3)
A 		10.7
(3)
A 		5.4
(-0.5)
A 		6.8
(0.4)
A 		9
C 1.5
(-3)
A 		1.5
(-3)
A 		8.1
(2.8)
A 		8.3
(3)
A 		7
avr 1.5
(-3) 		4.6
(-0.1) 		8
(3) 		5.6
(0.8) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2.1
(-1.8)
A 		4.2
(-0.2)
A 		0.6
(-3)
A 		8
(2.8)
A 		1.1
(-2.6)
A 		8.3
(3)
A 		8
B 2.1
(-2)
A 		2.4
(-1.8)
A 		3.6
(-0.8)
A 		0.8
(-3)
A 		5.9
(0.9)
A 		8.6
(3)
A 		8
C 6.5
(0)
A 		11.3
(2.8)
A 		2.3
(-2.4)
A 		11.6
(3)
A 		1.4
(-2.9)
A 		1.3
(-3)
A 		10
avr 3.6
(-1.2) 		6
(2) 		2.2
(-3) 		6.8
(3) 		2.8
(-2.2) 		6.1
(2.1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182289_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16534
Sequence Type Exemplar sequence
Representative Public ID F18E9.7 NCBI
Target Description F18E9.7 /REP_DB=WormBase Gene ID /WP=CE02664 /TR=Q19570 /GB=AAA68812.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077056(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077056 NCBI Caenorhabditis elegans F18E9.7 (F18E9.7) mRNA, complete cds. 11/11 A 
SNAP00000039248 ENSEMBL cdna:SNAP chromosome:CEL140:X:8595687:8597715:-1 11/11 None
GENEFINDER00000039252 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8595687:8597685:-1 11/11 None
F18E9.7 ENSEMBL cdna:known chromosome:CEL140:X:8595090:8597685:-1 gene:F18E9.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8595685-8597684(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F18E9.7
Entrez Gene 181113 Entrez gene
SwissProt Q19570 EMBL-EBI
WormBase CE28823 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68812 Hypothetical protein F18E9.7 [Caenorhabditis elegans] ref|NP_509457.1| F18E9.7 [Caenorhabditis elegans] 0.0
blast AAA68812 Hypothetical protein F18E9.7 [Caenorhabditis elegans] ref|NP_509457.1| F18E9.7 [Caenorhabditis elegans] 1.0E-169
blast CAE74846 Hypothetical protein CBG22692 [Caenorhabditis briggsae] 7.0E-73
blast CAE74846 Hypothetical protein CBG22692 [Caenorhabditis briggsae] 3.0E-71
blast CAE69416 Hypothetical protein CBG15579 [Caenorhabditis briggsae] 4.0E-71
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000039248 1 13-32
Sequence
Target Sequence 
>C. ELEGANS:182289_S_AT
gaaactcgttagtccagttaccacaccagttgcaactacagccagccctaagtcacggac
aacgaccgttattgtgaatcaacagaaatcatttatccccaatagttcaatcgacttgaa
gccttccagtaatgtcatcagtgaagtcaagctagagggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTCGTTAGTCCAGTTACCACA 442 355 885 Antisense
TCCAGTTACCACACCAGTTGCAACT 30 591 897 Antisense
TACCACACCAGTTGCAACTACAGCC 61 651 903 Antisense
CCAGCCCTAAGTCACGGACAACGAC 47 273 926 Antisense
GTCACGGACAACGACCGTTATTGTG 326 463 936 Antisense
ACGACCGTTATTGTGAATCAACAGA 227 93 946 Antisense
ACAGAAATCATTTATCCCCAATAGT 350 109 966 Antisense
ATTTATCCCCAATAGTTCAATCGAC 559 13 975 Antisense
GTTCAATCGACTTGAAGCCTTCCAG 209 445 989 Antisense
GAAGCCTTCCAGTAATGTCATCAGT 335 345 1002 Antisense
CATCAGTGAAGTCAAGCTAGAGGGT 63 213 1020 Antisense
Sequence Source Affymetrix Proprietary Database