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[182288_at]

Description F18E9.7 /REP_DB=WormBase Gene ID /WP=CE02664 /TR=Q19570 /GB=AAA68812.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 41      4grp_total > 07      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 56.4
(3)
A 		40.7
(1.2)
A 		40.6
(1.2)
A 		4.7
(-3)
A 		52
B 38
(1)
A 		6.9
(-3)
A 		36.2
(0.8)
A 		53.1
(3)
A 		46
C 34.5
(-0.4)
A 		2.6
(-3)
A 		21.8
(-1.5)
A 		77
(3)
A 		74
avr 43
(2.6) 		16.7
(-3) 		32.9
(0.4) 		44.9
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 36
(3)
A 		23.1
(0.7)
A 		30
(2)
A 		23.9
(0.9)
A 		7.7
(-2)
A 		1.7
(-3)
A 		34
B 9.4
(-2)
A 		17.8
(-0.7)
A 		40.7
(3)
A 		4.2
(-2.8)
A 		9.8
(-1.9)
A 		3.2
(-3)
A 		38
C 38.6
(0.5)
A 		38.7
(0.6)
A 		63.2
(3)
A 		62.8
(3)
A 		18.3
(-1.5)
A 		3
(-3)
A 		60
avr 28
(0.6) 		26.5
(0.4) 		44.6
(3) 		30.3
(1) 		11.9
(-1.7) 		2.6
(-3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 20.5
(3)
A 		8.8
(-0.5)
A 		10.6
(0)
A 		0.7
(-3)
A 		20
B 12.1
(3)
A 		1.7
(-3)
A 		8.4
(0.9)
A 		11.3
(2.5)
A 		10
C 11.4
(2.2)
A 		0.7
(-3)
A 		7.6
(0.4)
A 		13
(3)
A 		12
avr 14.7
(3) 		3.7
(-3) 		8.9
(-0.2) 		8.3
(-0.5) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 6.6
(1.8)
A 		8.2
(3)
A 		6.5
(1.7)
A 		6.1
(1.4)
A 		2.3
(-1.5)
A 		0.4
(-3)
A 		8
B 3.3
(-1.5)
A 		5.9
(0.3)
A 		9.9
(3)
A 		1.1
(-3)
A 		4
(-1)
A 		1.2
(-2.9)
A 		9
C 14.3
(2.3)
A 		11.8
(1.3)
A 		16.1
(3)
A 		12.6
(1.6)
A 		5.9
(-1.1)
A 		1
(-3)
A 		15
avr 8.1
(1.4) 		8.6
(1.7) 		10.8
(3) 		6.6
(0.5) 		4.1
(-1.1) 		0.9
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182288_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16534
Sequence Type Exemplar sequence
Representative Public ID F18E9.7 NCBI
Target Description F18E9.7 /REP_DB=WormBase Gene ID /WP=CE02664 /TR=Q19570 /GB=AAA68812.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077056
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000039248 ENSEMBL cdna:SNAP chromosome:CEL140:X:8595687:8597715:-1 11/11 None
GENEFINDER00000039252 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8595687:8597685:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_077056 8/11 Cross Hyb Matching Probes A 
F18E9.7 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8595685-8597684(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68812 Hypothetical protein F18E9.7 [Caenorhabditis elegans] ref|NP_509457.1| F18E9.7 [Caenorhabditis elegans] 1.0E-169
blast CAE74846 Hypothetical protein CBG22692 [Caenorhabditis briggsae] 7.0E-73
blast CAE69416 Hypothetical protein CBG15579 [Caenorhabditis briggsae] 4.0E-71
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000039248 1 13-32
Sequence
Target Sequence 
>C. ELEGANS:182288_AT
tttaccaaccactgaacaatccatcaacgaagagagaagctttagaatttttgaaacatt
tgaagtctgcttccgaagataaaacattgactgtagatgacacggtgaagcttaacgaga
aaatgcaaacgttggcgtttttggtacaagagcatgagtttgatgagaaaatttccgagt
tggaatcaatgctgaaaagtacccctcgggagtttaaaagaagccatcatgtccggaaaa
gtgcaatccccagacaaggggaaaccacagaacagtacacatccgccaacacttgctccg
gaaatagttctgaaattaaagtcaacgagaaacagaaactcgttagtccagttaccacac
cagttgcaactacagccagccctaagtcacggacaacgaccgttattgtgaatcaacaga
aatcatttatccccaatagttcaatcgacttgaagccttccagtaatgtcatcagtgaag
tcaagctagagggtaaagtgagcaccggtgcagccaaaaaagaaaaggacccgtctacca
cgacagtgtcttctttaaaagttccttcggaaaagcccaaagacgcagatcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTACCAACCACTGAACAATCCATC 120 675 551 Antisense
GAAACATTTGAAGTCTGCTTCCGAA 317 357 603 Antisense
GATGACACGGTGAAGCTTAACGAGA 554 409 646 Antisense
ATGCTGAAAAGTACCCCTCGGGAGT 504 39 739 Antisense
AAAAGAAGCCATCATGTCCGGAAAA 591 131 766 Antisense
GTCCGGAAAAGTGCAATCCCCAGAC 633 473 781 Antisense
AAACCACAGAACAGTACACATCCGC 519 125 812 Antisense
CGCCAACACTTGCTCCGGAAATAGT 284 255 834 Antisense
GTAAAGTGAGCACCGGTGCAGCCAA 498 459 1043 Antisense
CGTCTACCACGACAGTGTCTTCTTT 26 245 1082 Antisense
GGAAAAGCCCAAAGACGCAGATCAA 180 529 1119 Antisense
Sequence Source Affymetrix Proprietary Database