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[182285_at]

Description F13C5.1 /REP_DB=WormBase Gene ID /WP=CE19383 /TR=O76564 /GB=AAC64611.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 232
1 2 3 4 range
A 103.3
(0.1)
P 		5
(-3)
A 		5.5
(-3)
A 		195.9
(3)
P 		191
B 54
(-1.6)
A 		32.9
(-2.2)
A 		2
(-3)
A 		230.3
(3)
P 		228
C 147.6
(0.8)
P 		54.4
(-1.6)
A 		1.8
(-3)
A 		233.5
(3)
P 		232
avr 101.6
(-0.3) 		30.8
(-2.2) 		3.1
(-3) 		219.9
(3) 		217

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 81.1
(1.3)
A 		42.3
(-2.4)
A 		98.4
(3)
P 		35.5
(-3)
A 		60.4
(-0.6)
A 		57.9
(-0.9)
A 		63
B 61.1
(-0.3)
A 		67.4
(0.8)
P 		70.3
(1.3)
A 		45.4
(-3)
A 		76.4
(2.3)
A 		80.3
(3)
P 		35
C 36.7
(-3)
A 		95.2
(2.5)
P 		73.1
(0.4)
P 		101.1
(3)
A 		74.5
(0.5)
A 		77.8
(0.8)
P 		64
avr 59.6
(-3) 		68.3
(-0.5) 		80.6
(3) 		60.7
(-2.7) 		70.4
(0.1) 		72
(0.5) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 37.6
(3)
P 		1.1
(-3)
A 		1.4
(-3)
A 		28.7
(1.5)
P 		37
B 17.2
(-0.9)
A 		8.1
(-2.1)
A 		0.5
(-3)
A 		49.1
(3)
P 		49
C 48.9
(3)
P 		15.6
(-1.1)
A 		0.6
(-3)
A 		39.4
(1.8)
P 		48
avr 34.6
(2.3) 		8.3
(-1.8) 		0.8
(-3) 		39.1
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 14.9
(-0.1)
A 		15.1
(-0)
A 		21.4
(3)
P 		9
(-3)
A 		18.2
(1.5)
A 		14.1
(-0.5)
A 		12
B 21.3
(-0.1)
A 		22.4
(0.3)
P 		17.1
(-1.4)
A 		12
(-3)
A 		31.1
(3)
A 		29.9
(2.6)
P 		19
C 13.6
(-3)
A 		29
(3)
P 		18.6
(-1.1)
P 		20.3
(-0.4)
A 		24.1
(1.1)
A 		26.1
(1.9)
P 		15
avr 16.6
(-1.4) 		22.2
(1.7) 		19
(-0.1) 		13.8
(-3) 		24.5
(3) 		23.4
(2.4) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182285_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18578
Sequence Type Exemplar sequence
Representative Public ID F13C5.1 NCBI
Target Description F13C5.1 /REP_DB=WormBase Gene ID /WP=CE19383 /TR=O76564 /GB=AAC64611.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075726(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075726 NCBI Caenorhabditis elegans F13C5.1 (F13C5.1) mRNA, complete cds. 11/11 A 
SNAP00000042502 ENSEMBL cdna:SNAP chromosome:CEL140:X:602245:603032:1 9/11 None
F13C5.1 ENSEMBL cdna:known chromosome:CEL140:X:601575:604922:1 gene:F13C5.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000042510 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:601574-604906(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13C5.1
Entrez Gene 180411 Entrez gene
SwissProt O76564 EMBL-EBI
WormBase CE19383 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC64611 Hypothetical protein F13C5.1 [Caenorhabditis elegans] ref|NP_508127.1| F13C5.1 [Caenorhabditis elegans] 0.0
blast AAC64611 Hypothetical protein F13C5.1 [Caenorhabditis elegans] ref|NP_508127.1| F13C5.1 [Caenorhabditis elegans] 6.0E-47
blast CAE63644 Hypothetical protein CBG08142 [Caenorhabditis briggsae] 2.0E-40
blast CAE63644 Hypothetical protein CBG08142 [Caenorhabditis briggsae] 3.0E-39
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508127.1 2 10-27,60-82
F13C5.1 2 10-27,60-82
Sequence
Target Sequence 
>C. ELEGANS:182285_AT
aagtcctccaaaaacaatgctgtcaaggaaatcgacattgactgcaattcaagaaggagt
ggagttggccgatcagaatttgacggaaagcgaaaaaaaagtgaaatttgaatttaatca
ccttttaaacaatgctcaagtaaaattggtttatactctcacgaatcgtcgagcgtccaa
acggaaggcaccgcaacaaaaagtagctccaaatcgagcagcgacgcgaactttgaagaa
aacggtgcgagcgcggaaattgacgaagagacgaaaaagaagcagcgcggtgtgttcaag
tggatcactaacacatttcgaaagtcatcacggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTCCTCCAAAAACAATGCTGTCA 695 155 705 Antisense
GGAGTGGAGTTGGCCGATCAGAATT 128 515 760 Antisense
TGGTTTATACTCTCACGAATCGTCG 137 549 851 Antisense
TCTCACGAATCGTCGAGCGTCCAAA 249 613 861 Antisense
GAGCGTCCAAACGGAAGGCACCGCA 262 383 875 Antisense
GGCACCGCAACAAAAAGTAGCTCCA 463 535 891 Antisense
GTAGCTCCAAATCGAGCAGCGACGC 582 455 907 Antisense
GAGCAGCGACGCGAACTTTGAAGAA 84 389 920 Antisense
CGGTGCGAGCGCGGAAATTGACGAA 132 245 947 Antisense
GCAGCGCGGTGTGTTCAAGTGGATC 121 313 986 Antisense
AACACATTTCGAAAGTCATCACGGG 618 135 1014 Antisense
Sequence Source Affymetrix Proprietary Database