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[182284_s_at]

Description F55A11.7 /REP_DB=WormBase Gene ID /WP=CE20873 /TR=Q20802 /GB=CAA96660.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 97      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 93      6grp_total > 97      4grp_total > 44      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 286.5
(1.1)
P 		314.8
(3)
P 		250.2
(-1.4)
P 		227.5
(-3)
P 		87
B 218
(-3)
P 		281.7
(3)
P 		232.8
(-1.6)
P 		272
(2.1)
P 		64
C 325.4
(3)
P 		240.6
(-3)
P 		310.7
(2)
P 		269
(-1)
P 		85
avr 276.6
(2.4) 		279
(3) 		264.6
(-0.8) 		256.2
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 453
1 2 3 4 5 6 range
A 274.9
(-2.1)
P 		333.4
(-1)
P 		221.9
(-3)
P 		307.9
(-1.5)
P 		526
(2.4)
P 		561.6
(3)
P 		340
B 241.7
(-2.6)
P 		282.5
(-2)
P 		216.4
(-3)
P 		308.1
(-1.7)
P 		503.4
(1.2)
P 		630.2
(3)
P 		414
C 269.6
(-3)
P 		314.3
(-2.3)
P 		280.4
(-2.8)
P 		355.4
(-1.7)
P 		460.5
(-0.1)
P 		669.3
(3)
P 		400
avr 262.1
(-2.6) 		310.1
(-1.9) 		239.6
(-3) 		323.8
(-1.7) 		496.6
(1) 		620.4
(3) 		381
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 104.3
(3)
P 		68.3
(-0)
P 		65.4
(-0.3)
P 		33.3
(-3)
P 		71
B 69.5
(3)
P 		69.6
(3)
P 		54
(-3)
P 		58
(-1.5)
P 		16
C 107.7
(2.9)
P 		69.2
(-0.7)
P 		108.3
(3)
P 		45.4
(-3)
P 		63
avr 93.8
(3) 		69
(-0.1) 		75.9
(0.8) 		45.6
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 50.7
(-2.9)
P 		118.6
(0.8)
P 		48.3
(-3)
P 		78.1
(-1.4)
P 		158.7
(3)
P 		136.7
(1.8)
P 		110
B 84.1
(-2)
P 		94
(-1.6)
P 		52.5
(-3)
P 		81.6
(-2)
P 		204.5
(2)
P 		235
(3)
P 		183
C 99.9
(-1.9)
P 		95.9
(-2)
P 		71.4
(-3)
P 		71.5
(-3)
P 		149
(0.1)
P 		224
(3)
P 		153
avr 78.2
(-2.1) 		102.8
(-1.1) 		57.4
(-3) 		77.1
(-2.2) 		170.7
(1.8) 		198.6
(3) 		141
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182284_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13337
Sequence Type Exemplar sequence
Representative Public ID F55A11.7 NCBI
Target Description F55A11.7 /REP_DB=WormBase Gene ID /WP=CE20873 /TR=Q20802 /GB=CAA96660.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073572(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073572 NCBI Caenorhabditis elegans F55A11.7 (F55A11.7) mRNA, complete cds. 11/11 None
SNAP00000030960 ENSEMBL cdna:SNAP chromosome:CEL140:V:11787446:11789874:-1 11/11 None
GENEFINDER00000030964 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11787446:11790031:-1 11/11 None
F55A11.7 ENSEMBL cdna:known chromosome:CEL140:V:11787183:11790031:-1 gene:F55A11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11787445-11790031(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55A11.7
Entrez Gene 179614 Entrez gene
SwissProt Q20802 EMBL-EBI
WormBase CE20873 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA96660 Hypothetical protein F55A11.7 [Caenorhabditis elegans] ref|NP_505973.1| F55A11.7 [Caenorhabditis elegans] 0.0
blast CAE75297 Hypothetical protein CBG23267 [Caenorhabditis briggsae] 1.0E-138
blast CAE75297 Hypothetical protein CBG23267 [Caenorhabditis briggsae] 1.0E-125
blast CAE61888 Hypothetical protein CBG05879 [Caenorhabditis briggsae] 2.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 6.0E-10
Pfam IPR001841 EMBL-EBI Zn-finger, RING 6.0E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505973.1 2 233-255,265-287
F55A11.7 2 233-255,265-287
SNAP00000030960 2 197-219,229-251
GENEFINDER00000030964 2 233-255,265-287
Sequence
Target Sequence 
>C. ELEGANS:182284_S_AT
tatgggtcgttcgtcgatttctgtcgtcgatactacattcaacatttgtgctatgttttt
cttttcgcattcgtgttaactatgtttggaatcgcttttcatggatcgttgatttttcac
gaaactgtcgagtttgcgactatcgtgctctcagttctcgcattcttcttctttgtcctc
ttcgttggtgcatgcatattcacaatcaatcacacaattgtgactcgtcttcctcgattc
agaagacgctatgggaatattactgtcgtaccatacgatcccgatgttcgttcgaaaaag
gaagtgctcagatctctgaaggcagcacagagtgaatcgttcaatgaacgagagaatact
ccattgaatccaccgaagaatctgactgatatgtcattggaagcaataagatcggattcg
ggtgatttatcgatcggccaacaaatgttcggaataacttcaaatgctcggatattctca
tcgactccactgacacacaaaacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGGGTCGTTCGTCGATTTCTGTC 664 655 664 Antisense
GTCGTCGATACTACATTCAACATTT 318 473 686 Antisense
GTGCTATGTTTTTCTTTTCGCATTC 578 479 711 Antisense
TCGAGTTTGCGACTATCGTGCTCTC 209 603 791 Antisense
TCCTCTTCGTTGGTGCATGCATATT 415 593 839 Antisense
CACACAATTGTGACTCGTCTTCCTC 342 195 874 Antisense
ATACGATCCCGATGTTCGTTCGAAA 297 23 936 Antisense
GAGAATACTCCATTGAATCCACCGA 248 391 1015 Antisense
TCGGGTGATTTATCGATCGGCCAAC 531 605 1081 Antisense
TGCTCGGATATTCTCATCGACTCCA 369 581 1128 Antisense
TCGACTCCACTGACACACAAAACAA 74 603 1144 Antisense
Sequence Source Affymetrix Proprietary Database