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[182283_at]

Description F18E9.3 /REP_DB=WormBase Gene ID /WP=CE02660 /TR=Q19568 /GB=AAA68809.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 34      6grp_total > 11      4grp_total > 51      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 822
1 2 3 4 range
A 631.4
(0)
P 		917.4
(2.1)
P 		1040.3
(3)
P 		218.3
(-3)
A 		822
B 690.1
(0.3)
P 		1033.1
(3)
P 		579.8
(-0.5)
P 		266.7
(-3)
A 		766
C 737.8
(1.1)
P 		970
(3)
P 		750.5
(1.2)
P 		248.2
(-3)
M 		722
avr 686.4
(0.6) 		973.5
(3) 		790.2
(1.5) 		244.4
(-3) 		729

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 529
1 2 3 4 5 6 range
A 306.6
(-1.7)
P 		638.5
(3)
P 		289.5
(-2)
P 		218.6
(-3)
A 		257.5
(-2.4)
P 		242.7
(-2.7)
P 		420
B 293.5
(-1.3)
P 		563.7
(3)
P 		282.7
(-1.4)
P 		240.8
(-2.1)
P 		262
(-1.8)
P 		183.6
(-3)
P 		380
C 433.6
(1.5)
P 		543.2
(3)
P 		432.6
(1.5)
P 		109.8
(-3)
P 		309.3
(-0.2)
P 		195.8
(-1.8)
P 		433
avr 344.6
(-0.6) 		581.8
(3) 		334.9
(-0.8) 		189.7
(-3) 		276.3
(-1.7) 		207.4
(-2.7) 		392
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 247
1 2 3 4 range
A 229.9
(1.9)
P 		199.1
(1.2)
P 		272
(3)
P 		31.9
(-3)
A 		240
B 220.1
(1.9)
P 		255.2
(3)
P 		134.4
(-0.7)
P 		56.8
(-3)
A 		198
C 244.2
(2.1)
P 		278.9
(3)
P 		261.6
(2.6)
P 		41.8
(-3)
M 		237
avr 231.4
(2.6) 		244.4
(3) 		222.7
(2.4) 		43.5
(-3) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 205
1 2 3 4 5 6 range
A 56.5
(-3)
P 		227.1
(3)
P 		63
(-2.7)
P 		55.4
(-3)
A 		77.7
(-2.2)
P 		59.1
(-2.9)
P 		172
B 102.1
(-1.1)
P 		187.6
(3)
P 		68.6
(-2.8)
P 		63.8
(-3)
P 		106.5
(-0.9)
P 		68.5
(-2.8)
P 		124
C 160.7
(2.8)
P 		165.8
(3)
P 		110.1
(0.7)
P 		22.1
(-3)
P 		100.1
(0.3)
P 		65.5
(-1.2)
P 		144
avr 106.4
(-0.6) 		193.5
(3) 		80.6
(-1.6) 		47.1
(-3) 		94.8
(-1) 		64.4
(-2.3) 		146
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182283_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16273
Sequence Type Exemplar sequence
Representative Public ID F18E9.3 NCBI
Target Description F18E9.3 /REP_DB=WormBase Gene ID /WP=CE02660 /TR=Q19568 /GB=AAA68809.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077054
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000039251 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8586140:8589747:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_077054 8/11 Cross Hyb Matching Probes None
SNAP00000039246 8/11 Cross Hyb Matching Probes None
F18E9.3 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8586138-8589746(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE74924 Hypothetical protein CBG22805 [Caenorhabditis briggsae] 7.0E-88
blast AAA68809 Hypothetical protein F18E9.3 [Caenorhabditis elegans] ref|NP_509455.2| F18E9.3 [Caenorhabditis elegans] 7.0E-83
Sequence
Target Sequence 
>C. ELEGANS:182283_AT
gttataaccaccacagttcctacaacaactacaactgagaaaacaaaacttctctctaca
actccaacttccaccaccaccagaaccgtccaggcaactactagaatcaaaccacgtcat
ccaccacgcttcaatcaaaatcaaaactggaagcatccgatcagaaaactccaagagact
atttcacagacagctgctccgccaattagtagtttcattcaaattccaaggaggagacca
aattttgtaataaccaaaatttcggatcccaaaaataaacgttacaaatcacgtgttgat
cctgtcagtaactctcagccaaagcctgttgtgatccacactggaagatattctggtcca
acatacaactgtcgtgtgcttaatccattcactgacggtcaagcgtcatcagagcacgac
tcatcctgcaagatgctctatccaggattatcacttgatggaacatgccgttgtttctat
aaggtggctggaagagatgagcatggctgtgcgacaggcttcatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTATAACCACCACAGTTCCTACAA 453 447 487 Antisense
CAGAACCGTCCAGGCAACTACTAGA 98 205 567 Antisense
ACTAGAATCAAACCACGTCATCCAC 423 99 586 Antisense
GACTATTTCACAGACAGCTGCTCCG 697 371 663 Antisense
CTGCTCCGCCAATTAGTAGTTTCAT 558 237 680 Antisense
TGATCCTGTCAGTAACTCTCAGCCA 16 567 783 Antisense
TCAGCCAAAGCCTGTTGTGATCCAC 708 619 801 Antisense
AACTGTCGTGTGCTTAATCCATTCA 180 143 853 Antisense
GGTCAAGCGTCATCAGAGCACGACT 680 503 883 Antisense
GAGCACGACTCATCCTGCAAGATGC 56 391 898 Antisense
CATGGCTGTGCGACAGGCTTCATCT 457 209 988 Antisense
Sequence Source Affymetrix Proprietary Database