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[182282_s_at]

Description F59A3.6 /REP_DB=WormBase Gene ID /WP=CE11426 /TR=P91356 /GB=AAB37818.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 75      4grp_high_8_8 > 17      6grp_highest_nonorm > 91      6grp_total > 66      4grp_total > 31      6grp_highest_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 233
1 2 3 4 range
A 275.2
(3)
P 		97.2
(-2.4)
P 		75.6
(-3)
P 		142.6
(-1)
P 		200
B 265.6
(3)
P 		42.4
(-3)
M 		44.2
(-3)
A 		189.7
(1)
P 		223
C 198.8
(3)
P 		74.1
(-3)
P 		80.9
(-2.7)
P 		194.9
(2.8)
P 		125
avr 246.5
(3) 		71.2
(-2.9) 		66.9
(-3) 		175.7
(0.6) 		180

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 309
1 2 3 4 5 6 range
A 116.3
(-3)
P 		304.7
(1.9)
P 		144.4
(-2.3)
P 		325.9
(2.4)
P 		185.6
(-1.2)
P 		348.1
(3)
P 		232
B 167.2
(-3)
P 		190.4
(-2.1)
P 		169.9
(-2.9)
P 		327.3
(3)
P 		187.9
(-2.2)
P 		291.6
(1.7)
P 		160
C 197.1
(-2.1)
P 		259.4
(-0.7)
P 		298.5
(0.2)
P 		269.3
(-0.5)
P 		158.3
(-3)
P 		425.3
(3)
P 		267
avr 160.2
(-3) 		251.5
(-0.2) 		204.3
(-1.6) 		307.5
(1.5) 		177.3
(-2.5) 		355
(3) 		195
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 100.2
(3)
P 		21.1
(-2.9)
P 		19.8
(-3)
P 		20.9
(-2.9)
P 		80
B 84.7
(3)
P 		10.5
(-3)
M 		10.3
(-3)
A 		40.4
(-0.6)
P 		74
C 65.8
(3)
P 		21.3
(-3)
P 		28.2
(-2.1)
P 		32.9
(-1.4)
P 		45
avr 83.6
(3) 		17.6
(-3) 		19.4
(-2.8) 		31.4
(-1.7) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 21.4
(-3)
P 		108.3
(3)
P 		31.4
(-2.3)
P 		82.6
(1.2)
P 		56
(-0.6)
P 		84.8
(1.4)
P 		87
B 58.2
(-1.5)
P 		63.4
(-1)
P 		41.3
(-3)
P 		86.7
(1)
P 		76.3
(0.1)
P 		108.7
(3)
P 		67
C 73.1
(-1.6)
P 		79.1
(-1.2)
P 		76
(-1.4)
P 		54.2
(-2.8)
P 		51.2
(-3)
P 		142.4
(3)
P 		91
avr 50.9
(-2.9) 		83.6
(0.3) 		49.6
(-3) 		74.5
(-0.6) 		61.2
(-1.9) 		112
(3) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182282_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1881
Sequence Type Exemplar sequence
Representative Public ID F59A3.6 NCBI
Target Description F59A3.6 /REP_DB=WormBase Gene ID /WP=CE11426 /TR=P91356 /GB=AAB37818.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059215(11), NM_001026350(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059215 NCBI Caenorhabditis elegans F59A3.6 (F59A3.6) mRNA, complete cds. 11/11 None
NM_001026350 NCBI Caenorhabditis elegans F59A3.5 (F59A3.5) mRNA, complete cds. 11/11 None
SNAP00000013439 ENSEMBL cdna:SNAP chromosome:CEL140:I:5509579:5510263:-1 10/11 None
GENEFINDER00000013458 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5509579:5510279:-1 11/11 None
SNAP00000013440 ENSEMBL cdna:SNAP chromosome:CEL140:I:5510457:5511672:-1 11/11 None
GENEFINDER00000013462 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5510457:5511672:-1 11/11 None
F59A3.6.1 ENSEMBL cdna:known chromosome:CEL140:I:5509410:5511692:-1 gene:F59A3.6 11/11 None
F59A3.6.2 ENSEMBL cdna:known chromosome:CEL140:I:5509520:5511672:-1 gene:F59A3.6 11/11 None
F59A3.6.3 ENSEMBL cdna:known chromosome:CEL140:I:5510040:5511672:-1 gene:F59A3.6 11/11 None
F59A3.5.1 ENSEMBL cdna:known chromosome:CEL140:I:5509484:5511245:-1 gene:F59A3.5 11/11 None
F59A3.5.2 ENSEMBL cdna:known chromosome:CEL140:I:5509505:5510521:-1 gene:F59A3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5510456-5511672(-) 100.0 100.0
chrI:5509578-5510336(-) 64.63 64.63
Public Domain and Genome References
Gene Title

Ensembl F59A3.6
F59A3.5
Entrez Gene 186576 Entrez gene
3565471 Entrez gene
SwissProt Q8I7G2 EMBL-EBI
P91356 EMBL-EBI
WormBase CE33117 Wormbase
CE11426 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37818 Hypothetical protein F59A3.6 [Caenorhabditis elegans] ref|NP_491616.1| F59A3.6 [Caenorhabditis elegans] 1.0E-165
blast AAO12418 Hypothetical protein F59A3.5 [Caenorhabditis elegans] ref|NP_001021521.1| F59A3.5 [Caenorhabditis elegans] 3.0E-90
blast AAB37818 Hypothetical protein F59A3.6 [Caenorhabditis elegans] ref|NP_491616.1| F59A3.6 [Caenorhabditis elegans] 3.0E-90
Sequence
Target Sequence 
>C. ELEGANS:182282_S_AT
gacacaagcttcttatttattcttcaaaaagaatttgatcgagcgaatgcgaacttctaa
agcttataaatgggaaggaatgctggctccgccgttgtcacgacaaaatcataaaattga
cgcacaggctattttgagcccagttatcactagacaagtgaaaccgaccacgaaaacaca
gtccgaatcaatttcaccaaaaacttcttcggcattgaaagcgaaggttggcgcagttat
ccgatcagaagccgccagtaagggatacggcgacgaagaaggcgtaccattcgaaagaat
cttggctcgcataaaagatattccagagtctcgtcttcgagacattctgacagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACAAGCTTCTTATTTATTCTTC 130 367 480 Antisense
AATGGGAAGGAATGCTGGCTCCGCC 437 159 548 Antisense
GACGCACAGGCTATTTTGAGCCCAG 667 379 598 Antisense
TTGAGCCCAGTTATCACTAGACAAG 293 705 613 Antisense
AACACAGTCCGAATCAATTTCACCA 267 135 654 Antisense
TTTCACCAAAAACTTCTTCGGCATT 198 671 671 Antisense
GAAGGTTGGCGCAGTTATCCGATCA 344 335 702 Antisense
TATCCGATCAGAAGCCGCCAGTAAG 219 659 717 Antisense
CGGCGACGAAGAAGGCGTACCATTC 214 1 747 Antisense
GATATTCCAGAGTCTCGTCTTCGAG 395 427 796 Antisense
TCGTCTTCGAGACATTCTGACAGAA 35 605 810 Antisense
Sequence Source Affymetrix Proprietary Database