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[182281_at]

Description C12D8.12 /REP_DB=WormBase Gene ID /WP=CE05276 /TR=Q17943 /GB=CAA98239.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 04      6grp_cgc > 21      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 23.5
(-2.1)
A 		6.7
(-2.9)
A 		5.1
(-3)
A 		126.2
(3)
P 		121
B 42.9
(-0.8)
A 		8
(-3)
A 		34.4
(-1.3)
A 		102.1
(3)
P 		94
C 52.2
(-0.9)
P 		27.7
(-2.5)
A 		20.1
(-3)
A 		112.5
(3)
P 		92
avr 39.5
(-1.5) 		14.1
(-3) 		19.9
(-2.7) 		113.6
(3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 83
(2.4)
A 		33.6
(-2)
A 		89.7
(3)
P 		38.7
(-1.5)
A 		22.3
(-3)
A 		33.9
(-2)
A 		67
B 57.4
(3)
A 		54.3
(2.6)
A 		25.2
(-0.7)
A 		35.7
(0.5)
A 		5
(-3)
A 		46.4
(1.7)
A 		52
C 65.3
(2.2)
M 		73.6
(3)
M 		27.3
(-1.5)
A 		18.1
(-2.4)
A 		59
(1.6)
A 		12.1
(-3)
A 		62
avr 68.6
(3) 		53.8
(0.8) 		47.4
(-0.2) 		30.8
(-2.7) 		28.8
(-3) 		30.8
(-2.7) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 8.6
(-0.5)
A 		1.5
(-2.9)
A 		1.3
(-3)
A 		18.5
(3)
P 		17
B 13.7
(0.5)
A 		2
(-3)
A 		8
(-1.2)
A 		21.8
(3)
P 		20
C 17.3
(2.2)
P 		8
(-2.5)
A 		7
(-3)
A 		19
(3)
P 		12
avr 13.2
(0.5) 		3.8
(-3) 		5.4
(-2.4) 		19.8
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 15.3
(1)
A 		12
(-0.5)
A 		19.5
(3)
P 		9.8
(-1.5)
A 		6.7
(-3)
A 		8.2
(-2.3)
A 		13
B 20
(3)
A 		18.1
(2.4)
A 		6.1
(-1.6)
A 		9.5
(-0.5)
A 		2
(-3)
A 		17.3
(2.1)
A 		18
C 24.2
(3)
M 		22.5
(2.5)
M 		6.9
(-2)
A 		3.6
(-3)
A 		19.1
(1.5)
A 		4.1
(-2.9)
A 		21
avr 19.8
(3) 		17.5
(1.9) 		10.8
(-1.4) 		7.6
(-3) 		9.3
(-2.2) 		9.9
(-1.9) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182281_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12416
Sequence Type Exemplar sequence
Representative Public ID C12D8.12 NCBI
Target Description C12D8.12 /REP_DB=WormBase Gene ID /WP=CE05276 /TR=Q17943 /GB=CAA98239.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073230(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073230 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-182) (str-182) mRNA, complete cds. 11/11 None
SNAP00000021002 ENSEMBL cdna:SNAP chromosome:CEL140:V:10234401:10235178:-1 10/11 None
C12D8.12 ENSEMBL cdna:known chromosome:CEL140:V:10234401:10236010:-1 gene:C12D8.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10234400-10236010(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-182
Ensembl C12D8.12
Entrez Gene 182544 Entrez gene
SwissProt Q17943 EMBL-EBI
WormBase CE05276 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98239 Hypothetical protein C12D8.12 [Caenorhabditis elegans] ref|NP_505631.1| Seven TM Receptor family member (str-182) [Caenorhabditis elegans] 1.0E-175
blast CAE64769 Hypothetical protein CBG09560 [Caenorhabditis briggsae] 1.0E-122
blast CAA98239 Hypothetical protein C12D8.12 [Caenorhabditis elegans] ref|NP_505631.1| Seven TM Receptor family member (str-182) [Caenorhabditis elegans] 1.0E-87
blast CAE64769 Hypothetical protein CBG09560 [Caenorhabditis briggsae] 1.0E-55
blast NP_500679 Seven TM Receptor family member (str-168) [Caenorhabditis elegans] gb|AAF60931.2| Seven tm receptor protein 168 [Caenorhabditis elegans] 8.0E-38
blast CAE58526 Hypothetical protein CBG01681 [Caenorhabditis briggsae] 2.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.5E-6
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 7.1E-12
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 7.1E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505631.1 7 10-29,41-63,86-108,128-150,197-219,249-271,281-303
C12D8.12 7 10-29,41-63,86-108,128-150,197-219,249-271,281-303
SNAP00000021002 3 35-57,87-109,119-141
Sequence
Target Sequence 
>C. ELEGANS:182281_AT
aaattgtatatttgcgtttcagccaaatcaaagaagtacggaatttctaaggcctagaat
ggaaagagattttggaataaatgtggatgatgtgacttatattattgcggatttctatcc
aatgcatgaaaatggccagaaatttccatcaattggagcatttatatcaggatttaattt
tcttttaatgactacggtttcattatttgtaatcttcatattcggcttcaaatgctacta
cgaaatgacacgggttgttgttcccggacgaaactattcaataactcaaaaattacttca
aactcaattatttcgagctctcgtattccaaactcttattccactcatcattatgtatat
tcccttatttattttatttctattcccaatgctcaatattgacttgggatttgcccatta
cgtatctatttcgatatctttatatcctgcactggatgctcttccaagtattctactaat
cagagattatcgagattctttgattaaaatgtttaaaaagcaagagaatgtaccaatgtt
tgcaccgtactatgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTGTATATTTGCGTTTCAGCCA 603 115 441 Antisense
TTTGTAATCTTCATATTCGGCTTCA 235 667 646 Antisense
ATATTCGGCTTCAAATGCTACTACG 576 17 658 Antisense
TGTTGTTCCCGGACGAAACTATTCA 181 561 696 Antisense
AAACTCAATTATTTCGAGCTCTCGT 455 127 740 Antisense
GAGCTCTCGTATTCCAAACTCTTAT 456 387 755 Antisense
AACTCTTATTCCACTCATCATTATG 93 141 771 Antisense
TTTTATTTCTATTCCCAATGCTCAA 699 675 812 Antisense
GGGATTTGCCCATTACGTATCTATT 63 495 846 Antisense
TATATCCTGCACTGGATGCTCTTCC 528 661 881 Antisense
ACCAATGTTTGCACCGTACTATGTA 81 83 972 Antisense
Sequence Source Affymetrix Proprietary Database