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[182280_at]

Description F13C5.5 /REP_DB=WormBase Gene ID /WP=CE19387 /TR=O76565 /GB=AAC64615.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 03      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 12      6grp_total > 24      4grp_total > 53      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3742
1 2 3 4 range
A 4029.3
(3)
P 		2876.7
(1)
P 		1809.2
(-0.9)
P 		600.7
(-3)
P 		3429
B 4095.2
(3)
P 		2647.8
(0.5)
P 		1756
(-1.1)
P 		639
(-3)
P 		3456
C 4258.8
(3)
P 		2673.5
(0.5)
P 		1562
(-1.3)
P 		517
(-3)
P 		3742
avr 4127.8
(3) 		2732.7
(0.6) 		1709.1
(-1.1) 		585.6
(-3) 		3542

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3891
1 2 3 4 5 6 range
A 4247.9
(3)
P 		2735.2
(0.6)
P 		2136
(-0.3)
P 		1102.2
(-1.9)
P 		664.4
(-2.6)
P 		406.1
(-3)
P 		3842
B 2862.4
(3)
P 		2562
(2.3)
P 		2153.9
(1.3)
P 		1265.5
(-0.8)
P 		621.1
(-2.4)
P 		357.1
(-3)
P 		2505
C 2898.5
(3)
P 		2550.7
(2.2)
P 		1995.9
(0.9)
P 		1268.9
(-0.9)
P 		699.6
(-2.2)
P 		374.7
(-3)
P 		2524
avr 3336.3
(3) 		2616
(1.5) 		2095.3
(0.5) 		1212.2
(-1.3) 		661.7
(-2.4) 		379.3
(-3) 		2957
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1380
1 2 3 4 range
A 1467.1
(3)
P 		624.5
(-0.7)
P 		473
(-1.3)
P 		87.9
(-3)
P 		1379
B 1305.9
(3)
P 		653.9
(-0.3)
P 		406.9
(-1.6)
P 		136.2
(-3)
P 		1170
C 1409.8
(3)
P 		768.7
(0.1)
P 		544.4
(-0.9)
P 		87.2
(-3)
P 		1323
avr 1394.3
(3) 		682.4
(-0.3) 		474.8
(-1.3) 		103.8
(-3) 		1291

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 975
1 2 3 4 5 6 range
A 783.1
(1.7)
P 		972.8
(3)
P 		465.2
(-0.5)
P 		279.5
(-1.8)
P 		200.5
(-2.3)
P 		98.9
(-3)
P 		874
B 996
(3)
P 		852.8
(2)
P 		523
(-0.3)
P 		335.2
(-1.6)
P 		252.3
(-2.2)
P 		133.2
(-3)
P 		863
C 1074.3
(3)
P 		778.3
(1.1)
P 		508
(-0.6)
P 		255.2
(-2.2)
P 		226.4
(-2.4)
P 		125.4
(-3)
P 		949
avr 951.1
(3) 		868
(2.4) 		498.7
(-0.3) 		290
(-1.8) 		226.4
(-2.2) 		119.2
(-3) 		832
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182280_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18120
Sequence Type Exemplar sequence
Representative Public ID F13C5.5 NCBI
Target Description F13C5.5 /REP_DB=WormBase Gene ID /WP=CE19387 /TR=O76565 /GB=AAC64615.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075727(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075727 NCBI Caenorhabditis elegans F13C5.5 (F13C5.5) mRNA, complete cds. 11/11 None
GENEFINDER00000042509 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:605058:608485:-1 11/11 None
SNAP00000042504 ENSEMBL cdna:SNAP chromosome:CEL140:X:607140:608485:-1 9/11 None
F13C5.5.1 ENSEMBL cdna:known chromosome:CEL140:X:604927:608491:-1 gene:F13C5.5 11/11 None
F13C5.5.2 ENSEMBL cdna:known chromosome:CEL140:X:604927:608492:-1 gene:F13C5.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042503 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:605057-608485(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13C5.5
Entrez Gene 180412 Entrez gene
SwissProt O76565 EMBL-EBI
WormBase CE19387 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC64615 Hypothetical protein F13C5.5 [Caenorhabditis elegans] ref|NP_508128.1| F13C5.5 [Caenorhabditis elegans] 1.0E-107
blast CAE63643 Hypothetical protein CBG08141 [Caenorhabditis briggsae] 2.0E-92
blast AAC64615 Hypothetical protein F13C5.5 [Caenorhabditis elegans] ref|NP_508128.1| F13C5.5 [Caenorhabditis elegans] 9.0E-90
blast CAE63643 Hypothetical protein CBG08141 [Caenorhabditis briggsae] 2.0E-78
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508128.1 1 181-203
F13C5.5.1 1 181-203
F13C5.5.2 1 181-203
GENEFINDER00000042509 1 181-203
Sequence
Target Sequence 
>C. ELEGANS:182280_AT
atctgcaacaccgggcatttgtcatgcacctgttcagtttctcaggaagatgaagcccca
gttccagaaatctcttgcaatgccctaattgcaagagacttggaaaccggaaacttccca
gtagtctccgtagaatttgacctgaacaactccgccgaagcactggaagagttcccagaa
gacgctttcagagacaagatttcatcgtcgctccgtgttgacgaggaagatgttattgtt
cttcgcaccagctgtgttggaactgatgataccttgaccattcaatttgttatcctcaag
aaagacaccaactccagcgctcttccattcgctattgaagatctcatcgatgctgaatcc
attgctacgagaatgaaggccatgggacacctctctcaaattgctaacttggacgttgac
accattgaatacaccgaggaattggttgacttggaatttgagccaagcaaccttgagctg
atcttcaaagccatccttctcgcactcatcttcggatttttctttgttctcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTGCAACACCGGGCATTTGTCAT 181 33 82 Antisense
TGTCATGCACCTGTTCAGTTTCTCA 362 559 101 Antisense
AGATGAAGCCCCAGTTCCAGAAATC 43 65 129 Antisense
TCCAGAAATCTCTTGCAATGCCCTA 159 591 144 Antisense
ACTTCCCAGTAGTCTCCGTAGAATT 523 103 194 Antisense
GAAGAGTTCCCAGAAGACGCTTTCA 147 337 247 Antisense
AGACAAGATTTCATCGTCGCTCCGT 177 73 273 Antisense
GAATGAAGGCCATGGGACACCTCTC 221 251 452 Antisense
GACACCTCTCTCAAATTGCTAACTT 439 367 467 Antisense
TGAGCTGATCTTCAAAGCCATCCTT 611 569 555 Antisense
TCTTCGGATTTTTCTTTGTTCTCGG 410 617 590 Antisense
Sequence Source Affymetrix Proprietary Database