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[182279_at]

Description Y47H9C.1 /REP_DB=WormBase Gene ID /WP=CE20262 /TR=Q9XWE2 /GB=CAA21732.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 08      6grp_highest_nonorm > 60      6grp_total > 09      4grp_total > 62      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 439
1 2 3 4 range
A 307.7
(0.6)
P 		116
(-2)
P 		482.2
(3)
P 		42.8
(-3)
A 		439
B 308.6
(1.4)
P 		233.5
(-0)
P 		393.5
(3)
P 		77.8
(-3)
A 		316
C 314.5
(1.9)
P 		147.6
(-2.3)
P 		359.8
(3)
P 		118.7
(-3)
A 		241
avr 310.3
(1.2) 		165.7
(-1.4) 		411.8
(3) 		79.8
(-3) 		332

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 457
1 2 3 4 5 6 range
A 671.4
(3)
P 		249
(-3)
P 		265.9
(-2.8)
P 		396.3
(-0.9)
P 		293.6
(-2.4)
P 		273.7
(-2.6)
P 		422
B 500
(3)
P 		214.9
(-3)
P 		272.3
(-1.8)
P 		447
(1.9)
P 		299.1
(-1.2)
P 		225.3
(-2.8)
P 		285
C 667.7
(3)
P 		214.8
(-3)
P 		354.2
(-1.2)
P 		374.6
(-0.9)
P 		311.1
(-1.7)
P 		316.1
(-1.7)
P 		453
avr 613
(3) 		226.2
(-3) 		297.5
(-1.9) 		406
(-0.2) 		301.3
(-1.8) 		271.7
(-2.3) 		387
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 112
(2.3)
P 		25.2
(-2.1)
P 		126.1
(3)
P 		6.3
(-3)
A 		120
B 98.4
(3)
P 		57.7
(0)
P 		91.2
(2.5)
P 		16.6
(-3)
A 		82
C 104.1
(1.8)
P 		42.4
(-1.7)
P 		125.4
(3)
P 		20
(-3)
A 		105
avr 104.8
(2.4) 		41.8
(-1.3) 		114.2
(3) 		14.3
(-3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 123.8
(3)
P 		88.6
(-0.2)
P 		57.9
(-3)
P 		100.5
(0.9)
P 		88.6
(-0.2)
P 		66.6
(-2.2)
P 		66
B 174
(3)
P 		71.5
(-2.7)
P 		66.1
(-3)
P 		118.4
(-0.1)
P 		121.5
(0.1)
P 		84
(-2)
P 		108
C 247.5
(3)
P 		65.5
(-3)
P 		90.2
(-2.2)
P 		75.3
(-2.7)
P 		100.7
(-1.8)
P 		105.8
(-1.7)
P 		182
avr 181.8
(3) 		75.2
(-2.8) 		71.4
(-3) 		98.1
(-1.5) 		103.6
(-1.3) 		85.5
(-2.2) 		110
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182279_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.453
Sequence Type Exemplar sequence
Representative Public ID Y47H9C.1 NCBI
Target Description Y47H9C.1 /REP_DB=WormBase Gene ID /WP=CE20262 /TR=Q9XWE2 /GB=CAA21732.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060605(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060605 NCBI Caenorhabditis elegans Y47H9C.1 (Y47H9C.1) mRNA, complete cds. 11/11 None
SNAP00000036878 ENSEMBL cdna:SNAP chromosome:CEL140:I:11839147:11840568:-1 11/11 None
GENEFINDER00000036897 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11839147:11841288:-1 11/11 None
Y47H9C.1 ENSEMBL cdna:known chromosome:CEL140:I:11839147:11841288:-1 gene:Y47H9C.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11839077-11841219(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47H9C.1
Entrez Gene 173061 Entrez gene
SwissProt Q9XWE2 EMBL-EBI
WormBase CE20262 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21732 Hypothetical protein Y47H9C.1 [Caenorhabditis elegans] ref|NP_493006.1| Y47H9C.1 [Caenorhabditis elegans] 0.0
blast CAA21732 Hypothetical protein Y47H9C.1 [Caenorhabditis elegans] ref|NP_493006.1| Y47H9C.1 [Caenorhabditis elegans] 1.0E-167
blast AAT68887 Hypothetical protein ZK6.11b [Caenorhabditis elegans] ref|NP_001024315.1| ZK6.11b [Caenorhabditis elegans] 7.0E-96
blast AAG45577 Hypothetical protein ZK6.11a [Caenorhabditis elegans] ref|NP_001024314.1| ZK6.11a [Caenorhabditis elegans] 9.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.0E-126
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:182279_AT
ctcgtccggattactgtacgctggtttcccactagacagcaaagtgaatgtctatccaat
cttctcgaatccaataacaattcaaaattccgaggtgcttttccctaatgtggagacgtt
ctcattgagtctggcggcattctatattacaacgaataacggtttcagttttaaaataaa
gccaggatattacaacatcaatggaactaatacaacatccgtatatagcacaaccggatt
ttacatgaagcccgccggtgaagatgatagtaccatagttgttaatattgaaaatgatat
tcgatgttcgggaacttctggagcaagtgttgtcggacatttccctactggaggaaacgt
tactgtaggcttttataatggtatggcaaagtatgaacaatcagcaccgcccgaagacta
cccatcctacaatccatggaccatcccatttattggacagcatttcaaagtttcatcaac
aaacggaacggctggacagtactatgtacaatattttgtaaaccaaaggccaccaagaca
aacaacgccacctgagacaacaacaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGTCCGGATTACTGTACGCTGGT 283 231 519 Antisense
TACGCTGGTTTCCCACTAGACAGCA 613 647 535 Antisense
AATGTCTATCCAATCTTCTCGAATC 63 165 565 Antisense
GAGGTGCTTTTCCCTAATGTGGAGA 575 401 610 Antisense
GAGACGTTCTCATTGAGTCTGGCGG 11 395 631 Antisense
GTCTGGCGGCATTCTATATTACAAC 703 471 647 Antisense
ATTTTACATGAAGCCCGCCGGTGAA 489 11 756 Antisense
AAGTGTTGTCGGACATTTCCCTACT 443 159 843 Antisense
ACTACCCATCCTACAATCCATGGAC 691 101 935 Antisense
GGACCATCCCATTTATTGGACAGCA 438 523 956 Antisense
CAACGCCACCTGAGACAACAACAAA 663 185 1061 Antisense
Sequence Source Affymetrix Proprietary Database