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[182278_s_at]

Description M01D1.2 /REP_DB=WormBase Gene ID /WP=CE12244 /TR=O17224 /GB=AAB70998.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 18.7
(3)
A 		4.1
(-2.9)
A 		9.7
(-0.6)
A 		3.9
(-3)
A 		15
B 1.5
(-3)
A 		3.4
(-1.3)
A 		8.3
(3)
A 		3.3
(-1.4)
A 		7
C 7.9
(-2.3)
A 		3.7
(-2.7)
A 		1.2
(-3)
A 		57.4
(3)
A 		56
avr 9.4
(-1.1) 		3.7
(-3) 		6.4
(-2.1) 		21.5
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 6.9
(-3)
A 		50
(2.9)
P 		48.7
(2.8)
A 		50.5
(3)
P 		31.7
(0.4)
A 		30.7
(0.3)
A 		44
B 8.4
(-3)
A 		40.5
(-0.3)
A 		78.6
(3)
P 		42.3
(-0.1)
P 		15.5
(-2.4)
A 		30.5
(-1.1)
A 		70
C 9.6
(-3)
A 		22.4
(-0.6)
A 		41.4
(3)
A 		32.3
(1.3)
A 		12.5
(-2.5)
A 		24.4
(-0.2)
A 		32
avr 8.3
(-3) 		37.6
(0.7) 		56.2
(3) 		41.7
(1.2) 		19.9
(-1.5) 		28.5
(-0.5) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 6.8
(3)
A 		0.9
(-2.7)
A 		2.5
(-1.2)
A 		0.6
(-3)
A 		6
B 0.5
(-3)
A 		0.8
(-1.7)
A 		1.9
(3)
A 		0.7
(-2.1)
A 		1
C 2.6
(-1.6)
A 		1.1
(-2.5)
A 		0.4
(-3)
A 		9.7
(3)
A 		9
avr 3.3
(2.1) 		0.9
(-3) 		1.6
(-1.5) 		3.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.3
(-3)
A 		17.8
(3)
P 		10.6
(0.4)
A 		12.8
(1.2)
P 		9.6
(0)
A 		7.5
(-0.7)
A 		17
B 2.9
(-3)
A 		13.5
(0.9)
A 		19.1
(3)
P 		11.2
(0.1)
P 		6.3
(-1.7)
A 		11.4
(0.1)
A 		16
C 3.5
(-3)
A 		6.8
(-0.2)
A 		10.5
(3)
A 		6.5
(-0.4)
A 		4
(-2.6)
A 		8.2
(1)
A 		7
avr 2.6
(-3) 		12.7
(2.6) 		13.4
(3) 		10.2
(1.2) 		6.6
(-0.8) 		9
(0.6) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182278_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5298
Sequence Type Exemplar sequence
Representative Public ID M01D1.2 NCBI
Target Description M01D1.2 /REP_DB=WormBase Gene ID /WP=CE12244 /TR=O17224 /GB=AAB70998.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061490(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061490 NCBI Caenorhabditis elegans M01D1.2 (M01D1.2) mRNA, complete cds. 11/11 A 
GENEFINDER00000029295 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1033023:1036513:1 11/11 None
M01D1.2 ENSEMBL cdna:known chromosome:CEL140:II:1026892:1033603:1 gene:M01D1.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029283 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1026974-1033602(+) 95.8 100.0
Public Domain and Genome References
Gene Title
Ensembl M01D1.2
Entrez Gene 173482 Entrez gene
SwissProt O17224 EMBL-EBI
WormBase CE35998 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70998 Hypothetical protein M01D1.2 [Caenorhabditis elegans] ref|NP_493891.3| M01D1.2 [Caenorhabditis elegans] 0.0
blast B88035 protein M01D1.2 [imported] - Caenorhabditis elegans 0.0
blast AAF39963 Hypothetical protein T02H6.3 [Caenorhabditis elegans] ref|NP_493794.1| T02H6.3 [Caenorhabditis elegans] 0.0
blast CAB55158 Hypothetical protein Y116A8C.41 [Caenorhabditis elegans] ref|NP_503041.1| Y116A8C.41 [Caenorhabditis elegans] 8.0E-76
blast B88035 protein M01D1.2 [imported] - Caenorhabditis elegans 2.0E-62
blast AAB71026 Hypothetical protein K02E7.5 [Caenorhabditis elegans] ref|NP_493903.2| K02E7.5 [Caenorhabditis elegans] 2.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 4.7E-5
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.0E-6
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.7E-8
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 9.4E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 5.9E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.6E-8
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 8.0E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.3E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 3.6E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 8.0E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.8E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 6.1E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 5.9E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.4E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 5.1E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.3E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 4.5E-8
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 4.4E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.4E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 7.6E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 2.7E-8
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.4E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 5.5E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 4.4E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 2.0E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 3.6E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 3.2E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.7E-9
Sequence
Target Sequence 
>C. ELEGANS:182278_S_AT
gaacaccaagttgagatctgccaccgaacaagaagacctgataactatttaccagtgcga
ggagtttttgacgtcgaaatccaaaaaatctacaagtgagatgctccgaatcgcaatgga
gttcaatttggataatttgaagaatcactgcttatcaaatatgacgacatctgaacaaat
cgcagagattgtcagcgacttgaagctcggcggattggacaggccgttgctggaggcctt
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACACCAAGTTGAGATCTGCCACC 244 351 2052 Antisense
AGTTGAGATCTGCCACCGAACAAGA 676 63 2060 Antisense
GACCTGATAACTATTTACCAGTGCG 310 383 2086 Antisense
GAGGAGTTTTTGACGTCGAAATCCA 193 401 2110 Antisense
AGTGAGATGCTCCGAATCGCAATGG 680 57 2146 Antisense
ATCGCAATGGAGTTCAATTTGGATA 354 35 2161 Antisense
GAATCACTGCTTATCAAATATGACG 463 327 2193 Antisense
ATGACGACATCTGAACAAATCGCAG 468 43 2212 Antisense
GATTGTCAGCGACTTGAAGCTCGGC 101 435 2238 Antisense
GAAGCTCGGCGGATTGGACAGGCCG 375 343 2253 Antisense
GGACAGGCCGTTGCTGGAGGCCTTG 90 525 2268 Antisense
Sequence Source Affymetrix Proprietary Database