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[182277_at]

Description M01D1.2 /REP_DB=WormBase Gene ID /WP=CE12244 /TR=O17224 /GB=AAB70998.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 55      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 1.6
(-3)
A 		2.7
(3)
A 		2.6
(2.5)
A 		2
(-0.8)
A 		1
B 24.2
(3)
A 		0.6
(-3)
A 		9.6
(-0.7)
A 		0.8
(-2.9)
A 		24
C 3.3
(3)
A 		2.6
(1.3)
A 		1.1
(-2.3)
A 		0.8
(-3)
A 		3
avr 9.7
(3) 		2
(-2.4) 		4.4
(-0.7) 		1.2
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 15.6
(-2.1)
A 		10.9
(-3)
A 		38.5
(2.2)
P 		42.6
(3)
P 		24.9
(-0.4)
P 		23.3
(-0.7)
A 		32
B 7.6
(-2.3)
A 		33.1
(0.7)
P 		53.5
(3)
P 		1.1
(-3)
A 		21.7
(-0.6)
A 		2.2
(-2.9)
A 		52
C 19.8
(0)
A 		37.5
(3)
P 		29.2
(1.6)
P 		5.8
(-2.3)
A 		1.9
(-3)
A 		4
(-2.6)
A 		36
avr 14.3
(-2.1) 		27.2
(0.4) 		40.4
(3) 		16.5
(-1.7) 		16.2
(-1.7) 		9.8
(-3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.6
(1.5)
A 		0.6
(1.5)
A 		0.7
(3)
A 		0.3
(-3)
A 		0
B 7.7
(3)
A 		0.2
(-3)
A 		2.2
(-1.4)
A 		0.2
(-3)
A 		8
C 1.1
(3)
A 		0.7
(0.6)
A 		0.4
(-1.2)
A 		0.1
(-3)
A 		1
avr 3.1
(3) 		0.5
(-2.4) 		1.1
(-1.1) 		0.2
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.9
(-3)
A 		3.9
(-2.2)
A 		8.4
(1.2)
P 		10.8
(3)
P 		7.5
(0.5)
P 		5.7
(-0.9)
A 		8
B 2.7
(-1.9)
A 		11
(2.1)
P 		13
(3)
P 		0.3
(-3)
A 		8.8
(1)
A 		0.8
(-2.8)
A 		13
C 7.4
(0.8)
A 		11.4
(3)
P 		7.4
(0.8)
P 		1.2
(-2.7)
A 		0.6
(-3)
A 		1.3
(-2.6)
A 		11
avr 4.3
(-1.5) 		8.8
(2.3) 		9.6
(3) 		4.1
(-1.7) 		5.6
(-0.4) 		2.6
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182277_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5298
Sequence Type Exemplar sequence
Representative Public ID M01D1.2 NCBI
Target Description M01D1.2 /REP_DB=WormBase Gene ID /WP=CE12244 /TR=O17224 /GB=AAB70998.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061490(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061490 NCBI Caenorhabditis elegans M01D1.2 (M01D1.2) mRNA, complete cds. 9/11 A 
SNAP00000029283 ENSEMBL cdna:SNAP chromosome:CEL140:II:1026976:1036663:1 9/11 None
M01D1.2 ENSEMBL cdna:known chromosome:CEL140:II:1026892:1033603:1 gene:M01D1.2 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000029293 6/11 Cross Hyb Matching Probes None
GENEFINDER00000029295 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1026974-1033602(+) 95.8 100.0
Public Domain and Genome References
Gene Title
Ensembl M01D1.2
Entrez Gene 173482 Entrez gene
SwissProt O17224 EMBL-EBI
WormBase CE35998 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70998 Hypothetical protein M01D1.2 [Caenorhabditis elegans] ref|NP_493891.3| M01D1.2 [Caenorhabditis elegans] 0.0
blast B88035 protein M01D1.2 [imported] - Caenorhabditis elegans 0.0
blast AAB70998 Hypothetical protein M01D1.2 [Caenorhabditis elegans] ref|NP_493891.3| M01D1.2 [Caenorhabditis elegans] 1.0E-166
blast NP_494001 T07H3.3 [Caenorhabditis elegans] gb|AAC26311.2| Hypothetical protein T07H3.3 [Caenorhabditis elegans] 5.0E-59
blast AAB71026 Hypothetical protein K02E7.5 [Caenorhabditis elegans] ref|NP_493903.2| K02E7.5 [Caenorhabditis elegans] 2.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 4.7E-5
Pfam IPR002083 EMBL-EBI MATH 1.6E-10
Sequence
Target Sequence 
>C. ELEGANS:182277_AT
ggtagatctaccacagttcaaaaacgaattaaagacttggatacaaggaataaagatctg
agttctgacattggaacgcttggtgatgttgtgaagcagctgacactgatgaatgagaag
atggagaaggaggctgatcaacgcgcggaggttaacatggaacgtgaattgaaatcggtg
agcttttggtctggaaaaatgtcggaaattgtagaaaaatgtagaaaaatgtcaaaaaat
gtaggggaaatgtcgataaatgccaaaaaatgtgccaaaaatgtcaaaaatgctctaaaa
tcgaaacaacagctgaaaaatgacactttgaaaagccctgcgatcactgacgaaaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTAGATCTACCACAGTTCAAAAAC 636 503 1693 Antisense
TAAAGATCTGAGTTCTGACATTGGA 127 639 1743 Antisense
TCTGACATTGGAACGCTTGGTGATG 263 599 1756 Antisense
TTGGTGATGTTGTGAAGCAGCTGAC 336 693 1772 Antisense
GAAGCAGCTGACACTGATGAATGAG 357 341 1785 Antisense
GGCTGATCAACGCGCGGAGGTTAAC 391 539 1824 Antisense
CGCGCGGAGGTTAACATGGAACGTG 344 239 1834 Antisense
GGAACGTGAATTGAAATCGGTGAGC 650 529 1851 Antisense
AAATCGGTGAGCTTTTGGTCTGGAA 429 117 1864 Antisense
GACACTTTGAAAAGCCCTGCGATCA 295 367 2014 Antisense
AGCCCTGCGATCACTGACGAAAATG 540 81 2026 Antisense
Sequence Source Affymetrix Proprietary Database