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[182276_at]

Description T10B10.4 /REP_DB=WormBase Gene ID /WP=CE23963 /TR=Q22371 /GB=CAA96676.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 18      4grp_highest_8_8 > 54      4grp_high_8_8 > 18      6grp_highest_nonorm > 10      6grp_total > 27      4grp_total > 22      6grp_highest_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2443
1 2 3 4 range
A 3593.4
(2.7)
P 		2142
(-1.2)
P 		1436.1
(-3)
P 		3727
(3)
P 		2291
B 3848.3
(3)
P 		1993.5
(-1.6)
P 		1405.7
(-3)
P 		3636.4
(2.5)
P 		2443
C 3659.2
(3)
P 		2323.8
(-1)
P 		1646.5
(-3)
P 		2898.6
(0.7)
P 		2013
avr 3700.3
(3) 		2153.1
(-1.2) 		1496.1
(-3) 		3420.7
(2.2) 		2204

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1873
1 2 3 4 5 6 range
A 2432.2
(3)
P 		1931.6
(1.3)
P 		660.6
(-3)
P 		1206.2
(-1.2)
P 		1192.4
(-1.2)
P 		1201.7
(-1.2)
P 		1772
B 2200.1
(3)
P 		1570.3
(0.3)
P 		775.2
(-3)
P 		1010.7
(-2)
P 		989.2
(-2.1)
P 		1072.5
(-1.7)
P 		1425
C 2533.6
(3)
P 		1531.1
(-1.4)
P 		1157.1
(-3)
P 		1166.8
(-3)
P 		1192.3
(-2.8)
P 		1216.3
(-2.7)
P 		1377
avr 2388.6
(3) 		1677.7
(0.2) 		864.3
(-3) 		1127.9
(-2) 		1124.6
(-2) 		1163.5
(-1.8) 		1524
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 983
1 2 3 4 range
A 1308.4
(3)
P 		465
(-2.4)
P 		375.4
(-3)
P 		545.6
(-1.9)
P 		933
B 1227.2
(3)
P 		492.3
(-1.9)
P 		325.7
(-3)
P 		774.9
(-0)
P 		902
C 1211.3
(3)
P 		668.1
(-1.5)
P 		573.9
(-2.3)
P 		488.8
(-3)
P 		723
avr 1249
(3) 		541.8
(-2.1) 		425
(-3) 		603.1
(-1.7) 		824

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 795
1 2 3 4 5 6 range
A 448.4
(0.4)
P 		687
(3)
P 		143.9
(-3)
P 		305.9
(-1.2)
P 		359.8
(-0.6)
P 		292.6
(-1.4)
P 		543
B 765.5
(3)
P 		522.7
(0.5)
P 		188.2
(-3)
P 		267.7
(-2.2)
P 		401.9
(-0.8)
P 		399.9
(-0.8)
P 		577
C 939.1
(3)
P 		467.2
(-1)
P 		294.5
(-2.5)
P 		234.6
(-3)
P 		385.8
(-1.7)
P 		407.2
(-1.5)
P 		705
avr 717.7
(3) 		559
(1.1) 		208.9
(-3) 		269.4
(-2.3) 		382.5
(-1) 		366.6
(-1.1) 		509
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182276_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17954
Sequence Type Exemplar sequence
Representative Public ID T10B10.4 NCBI
Target Description T10B10.4 /REP_DB=WormBase Gene ID /WP=CE23963 /TR=Q22371 /GB=CAA96676.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NR_002426(11), NM_001029731(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NR_002426 NCBI Caenorhabditis elegans T10B10.4, miscRNA. 11/11 None
NM_001029731 NCBI Caenorhabditis elegans T10B10.4a (T10B10.4) mRNA, complete cds. 11/11 None
SNAP00000009614 ENSEMBL cdna:SNAP chromosome:CEL140:X:15190056:15192538:1 11/11 None
GENEFINDER00000009619 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15190056:15192538:1 10/11 None
T10B10.4a ENSEMBL cdna:known chromosome:CEL140:X:15190039:15192983:1 gene:T10B10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15189244-15192538(+) 100.0 100.0
Public Domain and Genome References
Ensembl T10B10.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96676 Hypothetical protein T10B10.4a [Caenorhabditis elegans] ref|NP_001024902.1| T10B10.4a [Caenorhabditis elegans] 1.0E-172
blast CAA96676 Hypothetical protein T10B10.4a [Caenorhabditis elegans] ref|NP_001024902.1| T10B10.4a [Caenorhabditis elegans] 1.0E-169
blast CAE63285 Hypothetical protein CBG07665 [Caenorhabditis briggsae] 1.0E-140
blast CAE63285 Hypothetical protein CBG07665 [Caenorhabditis briggsae] 1.0E-137
blast AAB88560 Hypothetical protein ZK185.3 [Caenorhabditis elegans] ref|NP_500585.2| ZK185.3 [Caenorhabditis elegans] 6.0E-19
Sequence
Target Sequence 
>C. ELEGANS:182276_AT
acgagttcatcaagccaacgctggcgctggctcaagtttcgggaacaagcatgaaccgcc
ttgagctcatcgacctaatcaatgaattccgcgactggactaataatgatctcagactct
ctttgttctacatgacagagtctcagaaaaagcttgccatgaccacaccattgcctaatg
tgccacatgggtattattacgacgagattgagccaaccgaggaagctgaaattgttaaca
acacatggaagcatgcaggtgctggcgatcttgagcaaacaatggccaaattgcttcgat
taccttcatcatgcgtccgtttcaacgggaagccggttgcatttgaaatgatcgacccgg
ctggattcttcaacaaccaatatgttttcgaggatcatcgccgcaagggactcggaaatg
cagttgagatggatcttattcacaaaactttaagcatcgggttttcaccattcaaaacgg
ttgccaaggacaacaaaattgtcttggacgcttcaattgccaacaaactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGAGTTCATCAAGCCAACGCTGGC 631 93 299 Antisense
TGATCTCAGACTCTCTTTGTTCTAC 574 565 405 Antisense
AGAAAAAGCTTGCCATGACCACACC 679 71 443 Antisense
GACCACACCATTGCCTAATGTGCCA 668 381 459 Antisense
GCATGCAGGTGCTGGCGATCTTGAG 356 309 549 Antisense
ATTGCTTCGATTACCTTCATCATGC 701 5 588 Antisense
TTCATCATGCGTCCGTTTCAACGGG 614 683 603 Antisense
TGAAATGATCGACCCGGCTGGATTC 701 571 642 Antisense
TTCGAGGATCATCGCCGCAAGGGAC 702 681 685 Antisense
TAAGCATCGGGTTTTCACCATTCAA 702 637 749 Antisense
GGACGCTTCAATTGCCAACAAACTG 651 523 804 Antisense
Sequence Source Affymetrix Proprietary Database