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[182275_at]

Description R08H2.11 /REP_DB=WormBase Gene ID /WP=CE12614 /TR=O17993 /GB=CAB04636.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 28      6grp_total_sub > Hat      6grp_cgc > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 30.2
(1.1)
A 		33.5
(1.8)
A 		9.4
(-3)
A 		39.6
(3)
A 		30
B 35.5
(3)
A 		30.3
(1.1)
A 		19
(-3)
A 		28
(0.3)
A 		17
C 24.1
(-2)
A 		27.2
(-1.5)
A 		17.1
(-3)
A 		58.3
(3)
A 		41
avr 29.9
(0.3) 		30.3
(0.4) 		15.2
(-3) 		42
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 6.5
(-3)
A 		26.8
(1.9)
A 		19.2
(0)
A 		9.3
(-2.3)
A 		31.6
(3)
A 		30.1
(2.6)
A 		25
B 15.3
(1.1)
A 		15.8
(1.4)
A 		5.7
(-3)
A 		17.8
(2.2)
A 		18.7
(2.6)
A 		19.6
(3)
A 		14
C 8.6
(-1.7)
A 		32.2
(3)
A 		7.4
(-2)
A 		13.1
(-0.8)
A 		2.2
(-3)
A 		14.3
(-0.6)
A 		30
avr 10.1
(-3) 		24.9
(3) 		10.8
(-2.7) 		13.4
(-1.7) 		17.5
(0) 		21.3
(1.5) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 11
(3)
A 		7.3
(0.4)
A 		2.5
(-3)
A 		5.8
(-0.7)
A 		9
B 11.3
(3)
A 		7.5
(-0.3)
A 		4.4
(-3)
A 		6
(-1.6)
A 		7
C 8
(0.2)
A 		7.8
(-0.1)
A 		5.9
(-3)
A 		9.8
(3)
A 		4
avr 10.1
(3) 		7.5
(0.3) 		4.3
(-3) 		7.2
(0) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.2
(-3)
A 		9.5
(3)
A 		4.2
(-0.8)
A 		2.3
(-2.2)
A 		9.5
(3)
A 		7.3
(1.4)
A 		8
B 5.3
(0.8)
A 		5.2
(0.7)
A 		1.4
(-3)
A 		4.7
(0.2)
A 		7.6
(3)
A 		7.3
(2.7)
A 		6
C 3.2
(-1.4)
A 		9.8
(3)
A 		1.9
(-2.2)
A 		2.6
(-1.7)
A 		0.7
(-3)
A 		4.8
(-0.3)
A 		9
avr 3.2
(-2.3) 		8.2
(3) 		2.5
(-3) 		3.2
(-2.3) 		5.9
(0.6) 		6.5
(1.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182275_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12858
Sequence Type Exemplar sequence
Representative Public ID R08H2.11 NCBI
Target Description R08H2.11 /REP_DB=WormBase Gene ID /WP=CE12614 /TR=O17993 /GB=CAB04636.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
R08H2.11 ENSEMBL cdna:pseudogene chromosome:CEL140:V:15369745:15370875:-1 gene:R08H2.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012519 3/11 Cross Hyb Matching Probes None
GENEFINDER00000012534 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15369744-15370599(-) 100.0 100.0
Public Domain and Genome References
Ensembl R08H2.11
Sequence
Target Sequence 
>C. ELEGANS:182275_AT
atctctcgtctgatctactacacgtatttcgttgctcccttcatggttgcactcgtagca
ttaatcataattgcaaaggaaacagatgcggctaaattgcgagatctgcaaatttaccca
tgtccaacgcgagagttttttatatattcagtttgtgtctttgagggtccaccagatgtc
atatttcttgtttttatctccttgttgctacatttaactggaaattcaatatttcatgtc
gcctgtctagtatattaccttcatgtctctccctcacgcattatctcaaagaataatcga
aaagatcagaaagtttttttatacagtattacggtacagctctcagtaccagttttaatg
gcaatttttccaacaacgaccgtcttgtttgcatcacaactgggatattatcgtcaagaa
tggatgaacttggccatcgactgcgttggatgtcacggtctcgctgagagccttgcaatc
at

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTCTCGTCTGATCTACTACACGT 437 33 121 Antisense
TACTACACGTATTTCGTTGCTCCCT 263 645 136 Antisense
TCCCTTCATGGTTGCACTCGTAGCA 440 597 156 Antisense
GATCTGCAAATTTACCCATGTCCAA 112 419 223 Antisense
CTTGTTTTTATCTCCTTGTTGCTAC 414 217 307 Antisense
AATATTTCATGTCGCCTGTCTAGTA 404 173 348 Antisense
TAGTATATTACCTTCATGTCTCTCC 580 653 368 Antisense
TCTCCCTCACGCATTATCTCAAAGA 446 611 388 Antisense
GCAATTTTTCCAACAACGACCGTCT 149 323 481 Antisense
CGACTGCGTTGGATGTCACGGTCTC 307 251 558 Antisense
GTCTCGCTGAGAGCCTTGCAATCAT 420 471 578 Antisense
Sequence Source Affymetrix Proprietary Database