[Home] | [Total List]

[182274_at]

Description K08D9.4 /REP_DB=WormBase Gene ID /WP=CE23863 /TR=Q9TXN5 /GB=AAC69354.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 27      4grp_high_8_8 > 20      6grp_total > 17      4grp_total > 20      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 77.2
(-3)
P 		81
(-2.5)
P 		81.6
(-2.5)
M 		125.5
(3)
P 		48
B 100.4
(1)
P 		96.2
(0.7)
P 		42.8
(-3)
P 		128.8
(3)
P 		86
C 95.5
(-0.1)
P 		73.9
(-1.8)
P 		57.5
(-3)
P 		136.8
(3)
P 		79
avr 91
(-0.4) 		83.7
(-1) 		60.6
(-3) 		130.4
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 79.3
(3)
P 		75.9
(2.6)
P 		56.5
(0.3)
A 		56.2
(0.2)
P 		29.1
(-3)
A 		55.1
(0.1)
P 		50
B 139
(3)
P 		78.9
(-0)
P 		52.6
(-1.3)
P 		19.8
(-3)
A 		52
(-1.4)
P 		53.9
(-1.3)
P 		119
C 154.5
(3)
P 		65.3
(-1.6)
P 		61.2
(-1.8)
A 		44.6
(-2.7)
P 		37.9
(-3)
P 		73
(-1.2)
P 		117
avr 124.3
(3) 		73.4
(-0.6) 		56.8
(-1.8) 		40.2
(-3) 		39.7
(-3) 		60.7
(-1.5) 		85
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 28.1
(3)
P 		17.6
(-3)
P 		21.3
(-0.9)
M 		18.4
(-2.5)
P 		11
B 32
(3)
P 		23.8
(0.8)
P 		9.9
(-3)
P 		27.5
(1.8)
P 		22
C 31.6
(3)
P 		21.3
(-2.3)
P 		20
(-3)
P 		23.1
(-1.4)
P 		12
avr 30.6
(3) 		20.9
(-1.3) 		17.1
(-3) 		23
(-0.4) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 14.6
(-1.1)
P 		27
(3)
P 		12.3
(-1.8)
A 		14.2
(-1.2)
P 		8.8
(-3)
A 		13.4
(-1.5)
P 		18
B 48.4
(3)
P 		26.3
(-0.1)
P 		12.8
(-2)
P 		5.3
(-3)
A 		21.1
(-0.8)
P 		20.1
(-0.9)
P 		43
C 57.3
(3)
P 		19.9
(-1.6)
P 		15.6
(-2.2)
A 		9
(-3)
P 		12.3
(-2.6)
P 		24.4
(-1.1)
P 		48
avr 40.1
(3) 		24.4
(-0.1) 		13.6
(-2.2) 		9.5
(-3) 		14.1
(-2.1) 		19.3
(-1.1) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182274_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15208
Sequence Type Exemplar sequence
Representative Public ID K08D9.4 NCBI
Target Description K08D9.4 /REP_DB=WormBase Gene ID /WP=CE23863 /TR=Q9TXN5 /GB=AAC69354.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071480(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071480 NCBI Caenorhabditis elegans K08D9.4 (K08D9.4) mRNA, complete cds. 11/11 A 
SNAP00000017182 ENSEMBL cdna:SNAP chromosome:CEL140:V:3198513:3200240:-1 11/11 None
GENEFINDER00000017190 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3198513:3200359:-1 10/11 None
K08D9.4 ENSEMBL cdna:known chromosome:CEL140:V:3198500:3200359:-1 gene:K08D9.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3198499-3200359(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08D9.4
Entrez Gene 187147 Entrez gene
SwissProt Q9TXN5 EMBL-EBI
WormBase CE23863 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC69354 Hypothetical protein K08D9.4 [Caenorhabditis elegans] ref|NP_503881.1| K08D9.4 [Caenorhabditis elegans] 0.0
blast AAC69354 Hypothetical protein K08D9.4 [Caenorhabditis elegans] ref|NP_503881.1| K08D9.4 [Caenorhabditis elegans] 1.0E-175
blast AAF36044 Hypothetical protein Y73C8B.1 [Caenorhabditis elegans] ref|NP_503880.1| Y73C8B.1 [Caenorhabditis elegans] 1.0E-165
blast AAF36044 Hypothetical protein Y73C8B.1 [Caenorhabditis elegans] ref|NP_503880.1| Y73C8B.1 [Caenorhabditis elegans] 1.0E-163
blast AAF36044 Hypothetical protein Y73C8B.1 [Caenorhabditis elegans] ref|NP_503880.1| Y73C8B.1 [Caenorhabditis elegans] 1.0E-157
blast AAF36045 Hypothetical protein Y73C8B.2 [Caenorhabditis elegans] ref|NP_503879.1| Y73C8B.2 [Caenorhabditis elegans] 9.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR010463 EMBL-EBI Protein of unknown function DUF1057 1.0E-126
Pfam IPR010463 EMBL-EBI Protein of unknown function DUF1057 1.0E-126
Pfam IPR010463 EMBL-EBI Protein of unknown function DUF1057 2.5E-119
Pfam IPR010463 EMBL-EBI Protein of unknown function DUF1057 1.2E-76
Sequence
Target Sequence 
>C. ELEGANS:182274_AT
gaaatagttactcagaagctctgttaaacgagctagatgtgccgggaaaagtgatcataa
tggggcatagcagaggatgtgagaatgcactgataacagcagctaatcggaaacctcatg
gactagtgatggctaatccaacagggttgaggattaataaagggtctcgtccgaagggaa
agttggagtcgctgatttatttacataagaaattgccgaaaaagattggagatgccattt
tgtataatttaatgaaattggttggattcaaaattcatgatggtgaagaagccgtggcgg
ttattcgagcaattatgaactgtgacctggaaaagcaactggaatacattctgaaattaa
atgaactgcccacaaagactatgatcacttttggcggaagtgatcatttaattga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATAGTTACTCAGAAGCTCTGTT 363 351 389 Antisense
GAGAATGCACTGATAACAGCAGCTA 564 391 469 Antisense
ACCTCATGGACTAGTGATGGCTAAT 47 89 501 Antisense
GTGATGGCTAATCCAACAGGGTTGA 662 481 514 Antisense
GAAGGGAAAGTTGGAGTCGCTGATT 39 335 561 Antisense
GGAGTCGCTGATTTATTTACATAAG 421 517 573 Antisense
GGAGATGCCATTTTGTATAATTTAA 328 519 616 Antisense
TGATGGTGAAGAAGCCGTGGCGGTT 593 565 666 Antisense
CTGAAATTAAATGAACTGCCCACAA 208 237 739 Antisense
AACTGCCCACAAAGACTATGATCAC 85 143 752 Antisense
TTGGCGGAAGTGATCATTTAATTGA 360 701 779 Antisense
Sequence Source Affymetrix Proprietary Database