[Home] | [Total List]

[182272_at]

Description F45E4.6 /REP_DB=WormBase Gene ID /WP=CE24983 /TR=Q94229 /GB=AAK29817.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 18.2
(-3)
A 		27.9
(-2.3)
A 		18.7
(-3)
A 		105.9
(3)
A 		88
B 15.4
(-3)
A 		48.3
(3)
A 		35.8
(0.7)
A 		35
(0.6)
A 		33
C 52.2
(3)
A 		14.9
(-3)
A 		20.6
(-2.1)
A 		42.9
(1.5)
P 		37
avr 28.6
(-2.4) 		30.4
(-2.1) 		25
(-3) 		61.3
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 67
(1.9)
A 		40.1
(-1.6)
A 		35.7
(-2.2)
P 		29.5
(-3)
A 		75.3
(3)
P 		71.8
(2.5)
P 		46
B 6.7
(-3)
A 		33.6
(-0.7)
P 		23
(-1.6)
A 		22.6
(-1.7)
A 		60.1
(1.5)
P 		78.2
(3)
P 		72
C 44.4
(-0.7)
A 		36.9
(-1.7)
P 		27.3
(-3)
A 		30.3
(-2.6)
A 		29.3
(-2.7)
P 		71.2
(3)
P 		44
avr 39.4
(-1.5) 		36.9
(-1.8) 		28.7
(-2.8) 		27.5
(-3) 		54.9
(0.6) 		73.7
(3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 6.6
(-2)
A 		6.1
(-2.3)
A 		4.9
(-3)
A 		15.5
(3)
A 		11
B 4.9
(-3)
A 		11.9
(3)
A 		8.3
(-0.1)
A 		7.5
(-0.8)
A 		7
C 17.3
(3)
A 		4.3
(-3)
A 		7.2
(-1.7)
A 		7.2
(-1.7)
P 		13
avr 9.6
(2.1) 		7.4
(-1.9) 		6.8
(-3) 		10.1
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 12.4
(-1.1)
A 		14.3
(-0.3)
A 		7.8
(-2.9)
P 		7.5
(-3)
A 		22.7
(3)
P 		17.5
(0.9)
P 		15
B 2.3
(-3)
A 		11.2
(-1)
P 		5.6
(-2.3)
A 		6
(-2.2)
A 		24.4
(1.9)
P 		29.2
(3)
P 		27
C 16.5
(0.5)
A 		11.2
(-1.3)
P 		6.9
(-2.7)
A 		6.1
(-3)
A 		9.5
(-1.8)
P 		23.8
(3)
P 		18
avr 10.4
(-1.6) 		12.2
(-1) 		6.8
(-2.9) 		6.5
(-3) 		18.9
(1.4) 		23.5
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182272_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8788
Sequence Type Exemplar sequence
Representative Public ID F45E4.6 NCBI
Target Description F45E4.6 /REP_DB=WormBase Gene ID /WP=CE24983 /TR=Q94229 /GB=AAK29817.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068839
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000024163 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7630755:7631921:-1 None
F45E4.6 ENSEMBL cdna:known chromosome:CEL140:IV:7630202:7632150:-1 gene:F45E4.6 None
NM_068839 NCBI Caenorhabditis elegans F45E4.6 (F45E4.6) mRNA, complete cds. None
GENEFINDER00000024176 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7630755:7632171:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7630207-7632177(-) 97.77 100.0
Public Domain and Genome References
Gene Title
Ensembl F45E4.6
Entrez Gene 185797 Entrez gene
SwissProt Q94229 EMBL-EBI
WormBase CE36593 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29817 Hypothetical protein F45E4.6 [Caenorhabditis elegans] ref|NP_501240.2| F45E4.6 [Caenorhabditis elegans] 0.0
blast T25755 hypothetical protein F45E4.6 - Caenorhabditis elegans 1.0E-180
blast T25755 hypothetical protein F45E4.6 - Caenorhabditis elegans 1.0E-161
blast AAK29817 Hypothetical protein F45E4.6 [Caenorhabditis elegans] ref|NP_501240.2| F45E4.6 [Caenorhabditis elegans] 1.0E-152
blast T25755 hypothetical protein F45E4.6 - Caenorhabditis elegans 1.0E-138
blast AAK29817 Hypothetical protein F45E4.6 [Caenorhabditis elegans] ref|NP_501240.2| F45E4.6 [Caenorhabditis elegans] 1.0E-114
blast CAE61928 Hypothetical protein CBG05925 [Caenorhabditis briggsae] 7.0E-52
blast CAE61928 Hypothetical protein CBG05925 [Caenorhabditis briggsae] 2.0E-49
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501240.2 1 202-224
F45E4.6 1 202-224
SNAP00000024163 1 123-145
GENEFINDER00000024176 1 192-214
Sequence
Target Sequence 
>C. ELEGANS:182272_AT
gagcacaagtttggcgtgtctttgacacatactacgatcaagtttaaccttgatcctctt
ctttttccaggtccaaaatggggtaattggtaccttaatctttttccatttgtgctagcc
agcttcgttatcggcttgttcatcatattcttttgcataacttgtatttaccaggatgac
aggaaacaagaaaaattgatggaaatatcacaagttgttggacactcggatcgtatcgat
ttcacactctatgatttgtacccatttgtcgggaaacttggaggttgtatctatactgaa
gctgatgcagtggatgataagaattcaattcacactttgtttatttacagcacaactaga
actactactaccacagcgaaaacgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCACAAGTTTGGCGTGTCTTTGA 687 389 622 Antisense
GTGTCTTTGACACATACTACGATCA 438 487 637 Antisense
CAAGTTTAACCTTGATCCTCTTCTT 523 183 660 Antisense
TCTTTTTCCATTTGTGCTAGCCAGC 131 615 720 Antisense
GCTAGCCAGCTTCGTTATCGGCTTG 428 301 735 Antisense
ATCGGCTTGTTCATCATATTCTTTT 294 35 751 Antisense
GTTGTTGGACACTCGGATCGTATCG 687 437 835 Antisense
GATCGTATCGATTTCACACTCTATG 115 419 850 Antisense
CACACTCTATGATTTGTACCCATTT 504 195 864 Antisense
TGTACCCATTTGTCGGGAAACTTGG 428 557 878 Antisense
CTACTACTACCACAGCGAAAACGAC 377 225 983 Antisense
Sequence Source Affymetrix Proprietary Database