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[182270_at]

Description F53C11.4 /REP_DB=WormBase Gene ID /WP=CE17853 /TR=Q93762 /GB=CAB02121.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 49      4grp_total > 43      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 445.9
(0.7)
M 		455
(3)
A 		430.8
(-3)
A 		443.3
(0.1)
A 		24
B 479.5
(3)
M 		470.8
(0.8)
A 		455.4
(-3)
A 		463.8
(-0.9)
P 		24
C 424
(-3)
P 		540.9
(3)
A 		427.1
(-2.8)
M 		427.3
(-2.8)
P 		117
avr 449.8
(-1.6) 		488.9
(3) 		437.8
(-3) 		444.8
(-2.2) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 398.9
(1)
A 		364.4
(-0.1)
M 		275.1
(-3)
A 		299.8
(-2.2)
A 		396.4
(0.9)
A 		461
(3)
P 		186
B 383.9
(3)
M 		360
(-0.5)
A 		346.8
(-2.4)
A 		350.4
(-1.9)
M 		342.6
(-3)
A 		379.8
(2.4)
M 		41
C 401.8
(1.8)
P 		375.9
(0.7)
A 		358.6
(-0.1)
M 		295.6
(-3)
A 		338
(-1.1)
A 		427.3
(3)
P 		132
avr 394.9
(1.4) 		366.8
(-0.1) 		326.8
(-2.4) 		315.3
(-3) 		359
(-0.6) 		422.7
(3) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 162.4
(3)
M 		98.8
(-0.9)
A 		112.6
(-0.1)
A 		64.9
(-3)
A 		98
B 152.9
(3)
M 		116.3
(-1.1)
A 		105.5
(-2.3)
A 		98.8
(-3)
P 		54
C 140.4
(1.9)
P 		155.5
(3)
A 		148.8
(2.5)
M 		72.1
(-3)
P 		83
avr 151.9
(3) 		123.5
(0.7) 		122.3
(0.6) 		78.6
(-3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 73.5
(-1.8)
A 		129.6
(3)
M 		59.9
(-3)
A 		76
(-1.6)
A 		119.6
(2.1)
A 		112.2
(1.5)
P 		70
B 133.6
(2.2)
M 		119.8
(0.7)
A 		84.2
(-3)
A 		92.8
(-2.1)
M 		139.2
(2.7)
A 		141.6
(3)
M 		57
C 148.9
(3)
P 		114.7
(0.7)
A 		91.3
(-0.9)
M 		59.5
(-3)
A 		109.4
(0.3)
A 		143
(2.6)
P 		89
avr 118.7
(1.5) 		121.4
(1.8) 		78.5
(-2.7) 		76.1
(-3) 		122.7
(2) 		132.3
(3) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182270_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14696
Sequence Type Exemplar sequence
Representative Public ID F53C11.4 NCBI
Target Description F53C11.4 /REP_DB=WormBase Gene ID /WP=CE17853 /TR=Q93762 /GB=CAB02121.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074013(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074013 NCBI Caenorhabditis elegans F53C11.4 (F53C11.4) mRNA, complete cds. 11/11 None
SNAP00000007159 ENSEMBL cdna:SNAP chromosome:CEL140:V:13787315:13789726:-1 11/11 None
GENEFINDER00000007170 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13787269:13789726:-1 11/11 None
F53C11.4.1 ENSEMBL cdna:known chromosome:CEL140:V:13786692:13789753:-1 gene:F53C11.4 11/11 None
F53C11.4.2 ENSEMBL cdna:known chromosome:CEL140:V:13786692:13790301:-1 gene:F53C11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13787314-13789726(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53C11.4
Entrez Gene 179873 Entrez gene
SwissProt Q93762 EMBL-EBI
WormBase CE17853 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02121 Hypothetical protein F53C11.4 [Caenorhabditis elegans] ref|NP_506414.1| F53C11.4 [Caenorhabditis elegans] 0.0
blast CAE66239 Hypothetical protein CBG11483 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:182270_AT
gggtgtctcattgacatctccaacacgtcaaggatctttcgacgaggatgatggagatga
tgaattgacagcgacatcacctggaatgcgaactcgctcgagaagtgaaagctgttcatc
gttgaaagggattttgaagtggccacgtcgtccgaacactatgagtagactcgccgccaa
accatacctcattcgatcttattcggaatgtcatcacgacgaatcatcattccctccatt
gatccctctccgattttctgaggatgatgaggatgctttccatgagaccgatgactcgtc
atcagattgctgtgttcttcctgctgctccacgaaagaagagtgtttcgtttagtgaacg
catcgagcagactcgtcttttcaacagtaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTGTCTCATTGACATCTCCAACA 45 497 1062 Antisense
GACATCACCTGGAATGCGAACTCGC 435 369 1134 Antisense
GGATTTTGAAGTGGCCACGTCGTCC 425 509 1190 Antisense
CACGTCGTCCGAACACTATGAGTAG 242 199 1205 Antisense
CCAAACCATACCTCATTCGATCTTA 129 275 1238 Antisense
CATCACGACGAATCATCATTCCCTC 167 213 1273 Antisense
GATCCCTCTCCGATTTTCTGAGGAT 245 417 1302 Antisense
GGATGCTTTCCATGAGACCGATGAC 688 513 1332 Antisense
ATCAGATTGCTGTGTTCTTCCTGCT 440 27 1362 Antisense
TCTTCCTGCTGCTCCACGAAAGAAG 85 617 1377 Antisense
GCAGACTCGTCTTTTCAACAGTAAC 216 313 1428 Antisense
Sequence Source Affymetrix Proprietary Database