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[182269_at]

Description T28B11.1 /REP_DB=WormBase Gene ID /WP=CE14335 /TR=Q22842 /GB=CAA98290.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 26      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 0      6grp_total > 26      4grp_total > 05      6grp_highest_sub > 01_02      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4898
1 2 3 4 range
A 2860.8
(0.7)
P 		1132.9
(-2.3)
P 		759
(-3)
P 		4205
(3)
P 		3446
B 2954.5
(-0.3)
P 		840.3
(-2.9)
P 		777.6
(-3)
P 		5637.8
(3)
P 		4860
C 2451.3
(-0.2)
P 		887.7
(-2.8)
P 		739.6
(-3)
P 		4356.9
(3)
P 		3617
avr 2755.5
(0) 		953.6
(-2.7) 		758.7
(-3) 		4733.2
(3) 		3975

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1647
1 2 3 4 5 6 range
A 2546.1
(3)
P 		2194.6
(1.7)
P 		899.1
(-3)
P 		1040.8
(-2.5)
P 		1708.3
(-0.1)
P 		1542.7
(-0.7)
P 		1647
B 1913.4
(2.2)
P 		1998.1
(3)
P 		1432.1
(-2.1)
P 		1405.1
(-2.3)
P 		1327.3
(-3)
P 		1387.6
(-2.5)
P 		671
C 2152.9
(3)
P 		2057.4
(2.4)
P 		1333.5
(-2.2)
P 		1203.9
(-3)
P 		1287.3
(-2.5)
P 		1432.2
(-1.6)
P 		949
avr 2204.1
(3) 		2083.4
(2.3) 		1221.6
(-3) 		1216.6
(-3) 		1441
(-1.6) 		1454.2
(-1.6) 		988
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1021
1 2 3 4 range
A 1041.6
(3)
P 		245.9
(-2.7)
P 		198.4
(-3)
P 		615.5
(-0)
P 		843
B 942.2
(1.5)
P 		207.5
(-2.8)
P 		180.2
(-3)
P 		1201.4
(3)
P 		1021
C 811.5
(3)
P 		255.2
(-3)
P 		257.8
(-3)
P 		734.6
(2.2)
P 		556
avr 931.8
(3) 		236.2
(-2.8) 		212.1
(-3) 		850.5
(2.3) 		720

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 602
1 2 3 4 5 6 range
A 469.4
(-0.2)
P 		780.5
(3)
P 		195.8
(-3)
P 		264
(-2.3)
P 		515.5
(0.3)
P 		375.6
(-1.2)
P 		585
B 665.8
(3)
P 		665.1
(3)
P 		347.8
(-3)
P 		372.2
(-2.5)
P 		539.2
(0.6)
P 		517.4
(0.2)
P 		318
C 798
(3)
P 		627.8
(1.2)
P 		339.4
(-1.9)
P 		242.1
(-3)
P 		416.5
(-1.1)
P 		479.5
(-0.4)
P 		556
avr 644.4
(2.3) 		691.1
(3) 		294.3
(-3) 		292.8
(-3) 		490.4
(-0) 		457.5
(-0.5) 		398
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182269_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14371
Sequence Type Exemplar sequence
Representative Public ID T28B11.1 NCBI
Target Description T28B11.1 /REP_DB=WormBase Gene ID /WP=CE14335 /TR=Q22842 /GB=CAA98290.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073334(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073334 NCBI Caenorhabditis elegans T28B11.1 (T28B11.1) mRNA, complete cds. 11/11 None
SNAP00000032022 ENSEMBL cdna:SNAP chromosome:CEL140:V:10715716:10717784:-1 11/11 None
GENEFINDER00000032024 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10715716:10721982:-1 11/11 None
T28B11.1.1 ENSEMBL cdna:known chromosome:CEL140:V:10714747:10717833:-1 gene:T28B11.1 11/11 A 
T28B11.1.2 ENSEMBL cdna:known chromosome:CEL140:V:10714749:10735007:-1 gene:T28B11.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10715715-10717784(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T28B11.1
Entrez Gene 179487 Entrez gene
SwissProt Q22842 EMBL-EBI
WormBase CE14335 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98290 Hypothetical protein T28B11.1 [Caenorhabditis elegans] ref|NP_505735.1| T28B11.1 [Caenorhabditis elegans] 0.0
blast CAE64874 Hypothetical protein CBG09680 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.6E-8
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.6E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000032024 2 91-113,120-142
Sequence
Target Sequence 
>C. ELEGANS:182269_AT
gcgtatttcggttcatcttgtcggatgtcacgaattccgcccacagaatctgtacaacgt
tgttcaagaatggttgggacttgcgaagccagttgttttcaaacagatttcaattgatgg
aggatcatataagtacaatgaattcatgaatataattgaacatcttcatgatattatcga
gaagcgtcctccacgcagtccgatgaatcgttcctttggaaatgagcaaaatgagcactc
aattgttcttgagagaacatgccgaattccacatccaaaggatcgtcgagttgttattca
attgaagtattgtaagccatcaagaagaatggtgcttaccattgaaagagaggattcacc
gattcccgtcacaacactgacgccagtttcatcgctttctcgactcgctcgtccacaatc
tgctgcttcagtcctctcaacaccgcttcgaaaaatttcctcctcgttgaagcccgtgtc
tccgattcccacgaataatagccgccaactcggtcgccctctttcccacgatccatgtaa
tttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGTATTTCGGTTCATCTTGTCGGA 293 291 1119 Antisense
GAATTCCGCCCACAGAATCTGTACA 649 323 1150 Antisense
GGGACTTGCGAAGCCAGTTGTTTTC 220 493 1194 Antisense
ATTATCGAGAAGCGTCCTCCACGCA 428 13 1291 Antisense
CACGCAGTCCGATGAATCGTTCCTT 178 199 1310 Antisense
ACATGCCGAATTCCACATCCAAAGG 298 107 1375 Antisense
AAGAGAGGATTCACCGATTCCCGTC 190 151 1464 Antisense
AACACTGACGCCAGTTTCATCGCTT 578 135 1491 Antisense
TCCTCTCAACACCGCTTCGAAAAAT 456 593 1550 Antisense
GAATAATAGCCGCCAACTCGGTCGC 233 327 1611 Antisense
TCTTTCCCACGATCCATGTAATTTC 528 615 1638 Antisense
Sequence Source Affymetrix Proprietary Database