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[182268_at] 7TM receptor, srbc family

Description C31A11.4 /REP_DB=WormBase Gene ID /WP=CE15655 /TR=O45281 /GB=CAB05686.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 46      6grp_total > 37      4grp_total > 02      6grp_cgc > 26      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 54.2
(-2.2)
P 		32.5
(-3)
A 		63.7
(-1.8)
A 		186.1
(3)
P 		154
B 62.9
(1.2)
P 		45.1
(-0.9)
A 		27.1
(-3)
A 		78.8
(3)
P 		52
C 42.1
(-3)
A 		84.6
(-1)
A 		52.2
(-2.5)
A 		168.1
(3)
P 		126
avr 53.1
(-2.7) 		54.1
(-2.6) 		47.7
(-3) 		144.3
(3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 91
(3)
A 		59.5
(-1)
M 		83.9
(2.1)
P 		69.1
(0.2)
P 		47.4
(-2.5)
P 		43.3
(-3)
A 		48
B 78.1
(3)
P 		59.9
(1.1)
P 		21.2
(-3)
P 		52.5
(0.3)
P 		54.2
(0.5)
P 		54.5
(0.5)
P 		57
C 51.1
(-0.8)
A 		83.7
(2.2)
P 		46.9
(-1.1)
A 		80.8
(1.9)
P 		26.5
(-3)
A 		92.4
(3)
P 		66
avr 73.4
(3) 		67.7
(1.9) 		50.7
(-1.4) 		67.5
(1.8) 		42.7
(-3) 		63.4
(1) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 19.7
(0.8)
P 		7.1
(-3)
A 		16.6
(-0.2)
A 		27.2
(3)
P 		20
B 20.1
(3)
P 		11.1
(-0.9)
A 		6.3
(-3)
A 		16.8
(1.6)
P 		14
C 13.9
(-3)
A 		24.3
(1.3)
A 		18.2
(-1.2)
A 		28.3
(3)
P 		14
avr 17.9
(-0.6) 		14.2
(-2.7) 		13.7
(-3) 		24.1
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 16.8
(0.5)
A 		21.2
(3)
M 		18.3
(1.4)
P 		17.5
(0.9)
P 		14.3
(-0.9)
P 		10.5
(-3)
A 		11
B 27.2
(3)
P 		19.9
(1)
P 		5.1
(-3)
P 		13.9
(-0.6)
P 		22
(1.6)
P 		20.3
(1.1)
P 		22
C 18.9
(-0.2)
A 		25.5
(1.5)
P 		11.9
(-2.1)
A 		16.2
(-1)
P 		8.6
(-3)
A 		30.9
(3)
P 		22
avr 21
(2.3) 		22.2
(3) 		11.8
(-3) 		15.9
(-0.6) 		15
(-1.2) 		20.6
(2.1) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182268_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13659
Sequence Type Exemplar sequence
Representative Public ID C31A11.4 NCBI
Target Description C31A11.4 /REP_DB=WormBase Gene ID /WP=CE15655 /TR=O45281 /GB=CAB05686.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074716(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074716 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-82) (srbc-82) mRNA, complete cds. 11/11 None
C31A11.4 ENSEMBL cdna:known chromosome:CEL140:V:16303159:16304061:1 gene:C31A11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16303158-16304061(+) 97.29 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srbc family
Gene Symbol srbc-82
Ensembl C31A11.4
Entrez Gene 183072 Entrez gene
SwissProt O45281 EMBL-EBI
WormBase CE15655 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05686 Hypothetical protein C31A11.4 [Caenorhabditis elegans] ref|NP_507117.1| Serpentine Receptor, class BC (class B-like) family member (srbc-82) [Caenorhabditis elegans] 1.0E-137
blast CAI58632 Hypothetical protein C31A11.10 [Caenorhabditis elegans] ref|NP_001023691.1| Serpentine Receptor, class BC (class B-like) family member (srbc-84) [Caenorhabditis elegans] 3.0E-94
blast CAB05685 Hypothetical protein C31A11.3 [Caenorhabditis elegans] ref|NP_507116.2| Serpentine Receptor, class BC (class B-like) family member (srbc-83) [Caenorhabditis elegans] 2.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 1.8E-110
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507117.1 6 10-32,44-66,81-103,124-143,177-199,219-241
C31A11.4 6 10-32,44-66,81-103,124-143,177-199,219-241
Sequence
Target Sequence 
>C. ELEGANS:182268_AT
ctcttggaaatttacgtgcgaccgttgcacttttgatatcattcgagagagccgtggcca
ctctatttccagttttctatcacaattatcgacaaaaactttcaaattgtattgtatggt
ttttaattattttattgattttattcgatcaatatatgctgtttggattttgtgacgttg
ttatagacacaccgctagactgttataattttctgtgtactatgaaccagtgttatgcca
cctattggttgtcacatgagcgaattttttcattttccaatgtatttttttctgctgtcg
tttcttttcgcttgtttatttggaatcacttcttcagtactcaagtgagcaacacaattt
caagagccacccgtaatgcacttttcgattcttttattgttatagcttttaatgttatcc
ccaacttcatgtttgctagtttttacactataattttggaaaaagttggagaattgactg
ttgccacgaagactgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTTGGAAATTTACGTGCGACCGT 254 95 278 Antisense
GCGACCGTTGCACTTTTGATATCAT 603 289 295 Antisense
TAGACACACCGCTAGACTGTTATAA 51 653 461 Antisense
GAACCAGTGTTATGCCACCTATTGG 100 345 501 Antisense
GCCACCTATTGGTTGTCACATGAGC 107 279 514 Antisense
TGTCGTTTCTTTTCGCTTGTTTATT 47 559 573 Antisense
GTTTATTTGGAATCACTTCTTCAGT 236 449 591 Antisense
AACACAATTTCAAGAGCCACCCGTA 134 135 628 Antisense
ACCCGTAATGCACTTTTCGATTCTT 7 91 646 Antisense
TTATCCCCAACTTCATGTTTGCTAG 26 681 692 Antisense
TTGACTGTTGCCACGAAGACTGCTG 329 703 751 Antisense
Sequence Source Affymetrix Proprietary Database