[Home] | [Total List]

[182267_at]

Description ZK666.10 /REP_DB=WormBase Gene ID /WP=CE16740 /TR=O18298 /GB=CAA88989.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 19      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2.4
(-3)
A 		5
(0.3)
A 		3.4
(-1.7)
A 		7.1
(3)
A 		5
B 4.5
(3)
A 		3.2
(-2.2)
A 		3
(-3)
A 		3
(-3)
A 		2
C 2.8
(-2)
A 		3.3
(-1.3)
A 		2.1
(-3)
A 		6.4
(3)
A 		4
avr 3.2
(-2.1) 		3.8
(-0.8) 		2.8
(-3) 		5.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 4.3
(3)
A 		2.4
(-3)
A 		2.8
(-1.7)
A 		3.6
(0.8)
A 		2.6
(-2.4)
A 		2.9
(-1.4)
A 		2
B 2.5
(-2.6)
A 		3.3
(-1.6)
A 		2.8
(-2.2)
A 		6.8
(3)
A 		3.9
(-0.8)
A 		2.2
(-3)
A 		5
C 2.4
(-1.7)
A 		4.4
(2.6)
A 		2.7
(-1.1)
A 		4.6
(3)
A 		3
(-0.4)
A 		1.8
(-3)
A 		3
avr 3.1
(-1.2) 		3.4
(-0.6) 		2.8
(-1.9) 		5
(3) 		3.2
(-1) 		2.3
(-3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.9
(-3)
A 		1.1
(3)
A 		0.9
(-3)
A 		1
(-0)
A 		0
B 1.4
(3)
A 		0.8
(-1.5)
A 		0.7
(-2.3)
A 		0.6
(-3)
A 		1
C 0.9
(0)
A 		1
(1.5)
A 		0.7
(-3)
A 		1.1
(3)
A 		0
avr 1.1
(3) 		1
(1) 		0.8
(-3) 		0.9
(-1) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.8
(1)
A 		0.8
(1)
A 		0.6
(-3)
A 		0.9
(3)
A 		0.8
(1)
A 		0.7
(-1)
A 		0
B 0.9
(-1.9)
A 		1.1
(-0.8)
A 		0.7
(-3)
A 		1.8
(3)
A 		1.6
(1.9)
A 		0.8
(-2.5)
A 		1
C 0.9
(-0.8)
A 		1.4
(3)
A 		0.7
(-2.3)
A 		0.9
(-0.8)
A 		1
(0)
A 		0.6
(-3)
A 		1
avr 0.9
(-0.6) 		1.1
(1.8) 		0.7
(-3) 		1.2
(3) 		1.1
(1.8) 		0.7
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182267_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2957
Sequence Type Exemplar sequence
Representative Public ID ZK666.10 NCBI
Target Description ZK666.10 /REP_DB=WormBase Gene ID /WP=CE16740 /TR=O18298 /GB=CAA88989.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000005233 ENSEMBL cdna:SNAP chromosome:CEL140:II:10472351:10473579:-1 9/11 None
GENEFINDER00000005249 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10471606:10473564:-1 11/11 None
ZK666.10 ENSEMBL cdna:pseudogene chromosome:CEL140:II:10472351:10473579:-1 gene:ZK666.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10472526-10473576(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK666.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T27951 hypothetical protein ZK666.10 - Caenorhabditis elegans 1.0E-139
blast CAA20951 Hypothetical protein Y102A5C.29 [Caenorhabditis elegans] ref|NP_507301.1| Serpentine Receptor, class I family member (sri-9) [Caenorhabditis elegans] 1.0E-131
blast CAB03314 Hypothetical protein T06E6.4 [Caenorhabditis elegans] ref|NP_506828.2| Serpentine Receptor, class I family member (sri-7) [Caenorhabditis elegans] 1.0E-100
blast T27951 hypothetical protein ZK666.10 - Caenorhabditis elegans 1.0E-96
blast CAA20951 Hypothetical protein Y102A5C.29 [Caenorhabditis elegans] ref|NP_507301.1| Serpentine Receptor, class I family member (sri-9) [Caenorhabditis elegans] 1.0E-88
blast CAB03314 Hypothetical protein T06E6.4 [Caenorhabditis elegans] ref|NP_506828.2| Serpentine Receptor, class I family member (sri-7) [Caenorhabditis elegans] 3.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 5.7E-30
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000005233 4 25-47,67-89,110-127,209-231
GENEFINDER00000005249 6 20-42,62-84,105-122,168-190,211-233,243-265
Sequence
Target Sequence 
>C. ELEGANS:182267_AT
ttctttccactggtagctgccattacgttgagagaaggtcatcgcataataatgagtaat
caaatggctctcacaatatggatattcctgctctgtcttgttcttccggcgagtataact
tgttttatctacagacatgatgcagctttgcaaatcaatgaaaacaactccagtaaatat
tcccacaaaaaacttgccatgattttaaatcacattttcccatttctcaccgccatcggc
acctcaaattgtcaaagtactattgagcagaaatatgaatatgtgctgcagaattaccca
cagtgcatatcttgggtagcatcagaaaatttcgaggcgtatgactatcatgtgaatcct
tggcttgtaaggacggttagtgcggggattggatttatggtcgtcagtacaatccatggc
gcctgtcttggcgttcatacaatgattgtcctccaacgcctccgatcccatatgtccgta
caaatctatcagacgcaccgaacagccctcataagtttagcaatgcaaatggcctgtcct
tgtgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTTCCACTGGTAGCTGCCATTA 428 691 148 Antisense
ATATGGATATTCCTGCTCTGTCTTG 649 21 223 Antisense
GTTCTTCCGGCGAGTATAACTTGTT 263 1 247 Antisense
GCCATCGGCACCTCAAATTGTCAAA 166 281 379 Antisense
GAATTACCCACAGTGCATATCTTGG 31 325 438 Antisense
ACTATCATGTGAATCCTTGGCTTGT 696 101 491 Antisense
TGGTCGTCAGTACAATCCATGGCGC 283 553 545 Antisense
GCCTGTCTTGGCGTTCATACAATGA 674 281 568 Antisense
CCGATCCCATATGTCCGTACAAATC 387 263 609 Antisense
AATCTATCAGACGCACCGAACAGCC 274 169 630 Antisense
AATGCAAATGGCCTGTCCTTGTGTT 594 165 669 Antisense
Sequence Source Affymetrix Proprietary Database