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[182266_at]

Description F41G3.2 /REP_DB=WormBase Gene ID /WP=CE01286 /TR=Q20293 /GB=AAA81111.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 43      6grp_total > 20      4grp_total > 33      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 83.8
(-3)
A 		125.2
(-0)
P 		167
(3)
P 		139.5
(1)
A 		83
B 89.5
(-2.6)
A 		146.2
(3)
P 		93.9
(-2.2)
P 		85.3
(-3)
A 		61
C 65.9
(-3)
M 		142.3
(2.5)
P 		133.3
(1.8)
P 		149.9
(3)
A 		84
avr 79.7
(-3) 		137.9
(3) 		131.4
(2.3) 		124.9
(1.7) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 122.7
(-1.4)
A 		141.9
(0.9)
P 		124.7
(-1.2)
A 		143.3
(1.1)
P 		158.6
(3)
P 		110
(-3)
P 		49
B 159
(2.9)
P 		159.6
(3)
P 		158.6
(2.9)
M 		129.7
(-0.5)
P 		107.7
(-3)
P 		134.7
(0.1)
P 		52
C 101.4
(-2.9)
P 		184.4
(3)
P 		146.8
(0.3)
P 		127.9
(-1)
A 		100.5
(-3)
P 		110.3
(-2.3)
P 		84
avr 127.7
(-1.7) 		162
(3) 		143.4
(0.4) 		133.6
(-0.9) 		122.3
(-2.5) 		118.3
(-3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 30.5
(-0.4)
A 		27.2
(-1.2)
P 		43.7
(3)
P 		20.4
(-3)
A 		23
B 28.5
(0.5)
A 		36.1
(3)
P 		21.8
(-1.8)
P 		18.2
(-3)
A 		18
C 21.8
(-3)
M 		40.9
(1.6)
P 		46.5
(3)
P 		25.3
(-2.1)
A 		25
avr 26.9
(-0.9) 		34.7
(2) 		37.3
(3) 		21.3
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 22.6
(-3)
A 		50.5
(3)
P 		27.2
(-2)
A 		36.3
(-0.1)
P 		47.9
(2.4)
P 		26.8
(-2.1)
P 		28
B 55.3
(3)
P 		53.1
(2.4)
P 		38.5
(-1.8)
M 		34.4
(-3)
P 		43.7
(-0.3)
P 		50.2
(1.5)
P 		21
C 37.6
(-0.7)
P 		56.3
(3)
P 		37.4
(-0.7)
P 		25.7
(-3)
A 		32.5
(-1.7)
P 		36.9
(-0.8)
P 		31
avr 38.5
(-1.2) 		53.3
(3) 		34.4
(-2.3) 		32.1
(-3) 		41.4
(-0.4) 		38
(-1.3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182266_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4780
Sequence Type Exemplar sequence
Representative Public ID F41G3.2 NCBI
Target Description F41G3.2 /REP_DB=WormBase Gene ID /WP=CE01286 /TR=Q20293 /GB=AAA81111.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062982(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062982 NCBI Caenorhabditis elegans F41G3.2 (F41G3.2) mRNA, complete cds. 11/11 None
GENEFINDER00000017957 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6759226:6760358:1 11/11 None
F41G3.2 ENSEMBL cdna:known chromosome:CEL140:II:6759226:6760491:1 gene:F41G3.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017949 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6759221-6760487(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41G3.2
Entrez Gene 174113 Entrez gene
SwissProt Q20293 EMBL-EBI
WormBase CE01286 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81111 Hypothetical protein F41G3.2 [Caenorhabditis elegans] ref|NP_495383.1| F41G3.2 [Caenorhabditis elegans] 1.0E-174
blast AAA81111 Hypothetical protein F41G3.2 [Caenorhabditis elegans] ref|NP_495383.1| F41G3.2 [Caenorhabditis elegans] 1.0E-163
blast CAE65963 Hypothetical protein CBG11146 [Caenorhabditis briggsae] 3.0E-90
blast CAE65963 Hypothetical protein CBG11146 [Caenorhabditis briggsae] 5.0E-89
Sequence
Target Sequence 
>C. ELEGANS:182266_AT
gaagtgctcaatcatacgatcatttggataattcgattcgatcaccaattgagagatcac
attcttcacataatatacatcatatgaagagtgttgagtcatcgtatcatctcagtggag
catatggaaatgcaaattatggttcaatgccaagagctcaacgaaagccaggatcttacc
aacctcaaatgcatgatcatcgttcacaagacggaggataccgtcaaccccaaaccgaaa
cctttttcgtcagacaccaaccgcttctgaggcgacgaacgccggttggcagaaatcagc
tccgtcattcgagacgaagtcgtccgtcgcagttcattcaggcttacagcttccagccgc
ccgaatttcaatttcatcttatcagcaaagatccaacgacaagtatcagaatcccaaatc
tatgtacgcttcaaaacaacacgacacgactcgtaaaattgggctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTGCTCAATCATACGATCATTT 668 335 350 Antisense
GTCATCGTATCATCTCAGTGGAGCA 379 467 447 Antisense
GAAAGCCAGGATCTTACCAACCTCA 277 355 512 Antisense
CAACCGCTTCTGAGGCGACGAACGC 489 183 607 Antisense
ACGCCGGTTGGCAGAAATCAGCTCC 640 89 628 Antisense
AATCAGCTCCGTCATTCGAGACGAA 344 171 643 Antisense
CGAGACGAAGTCGTCCGTCGCAGTT 426 249 659 Antisense
CGCAGTTCATTCAGGCTTACAGCTT 665 253 677 Antisense
CCGCCCGAATTTCAATTTCATCTTA 694 261 706 Antisense
GAATCCCAAATCTATGTACGCTTCA 54 331 758 Antisense
GACACGACTCGTAAAATTGGGCTCT 316 367 792 Antisense
Sequence Source Affymetrix Proprietary Database