[Home] | [Total List]

[182265_s_at]

Description ZK484.3 /REP_DB=WormBase Gene ID /WP=CE15341 /TR=O44895 /GB=AAK39389.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 29      4grp_highest_8_8 > 41      4grp_high_8_8 > 50      6grp_highest_nonorm > 75      6grp_total > 28      4grp_total > 53      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 600
1 2 3 4 range
A 1005.9
(3)
P 		774.1
(-0.1)
P 		751.7
(-0.4)
P 		558.8
(-3)
P 		447
B 866.7
(3)
P 		764.4
(0.5)
P 		796.4
(1.3)
P 		622.3
(-3)
P 		244
C 1107.9
(3)
P 		968.6
(1.6)
P 		811.7
(0)
P 		507.8
(-3)
P 		600
avr 993.5
(3) 		835.7
(0.8) 		786.6
(0.1) 		563
(-3) 		431

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 594
1 2 3 4 5 6 range
A 935.5
(1.3)
P 		1071.7
(3)
P 		585.7
(-3)
P 		691.4
(-1.7)
P 		855.5
(0.3)
P 		1043.2
(2.6)
P 		486
B 1106.4
(3)
P 		639.1
(-3)
P 		790.4
(-1.1)
P 		703.6
(-2.2)
P 		804.8
(-0.9)
P 		850
(-0.3)
P 		467
C 1179.2
(3)
P 		931.9
(-0.1)
P 		790.8
(-1.8)
P 		694.9
(-3)
P 		787.8
(-1.8)
P 		736
(-2.5)
P 		484
avr 1073.7
(3) 		880.9
(-0.1) 		722.3
(-2.6) 		696.6
(-3) 		816
(-1.1) 		876.4
(-0.1) 		377
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 285
1 2 3 4 range
A 366.2
(3)
P 		168
(-1.2)
P 		196.5
(-0.6)
P 		81.8
(-3)
P 		284
B 276.4
(3)
P 		188.8
(-0.7)
P 		184.6
(-0.8)
P 		132.6
(-3)
P 		144
C 366.7
(3)
P 		278.5
(1.1)
P 		282.9
(1.2)
P 		85.6
(-3)
P 		281
avr 336.4
(3) 		211.8
(-0.2) 		221.3
(0.1) 		100
(-3) 		236

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 310
1 2 3 4 5 6 range
A 172.5
(-1.9)
P 		381.1
(3)
P 		127.6
(-3)
P 		175.3
(-1.9)
P 		258.1
(0.1)
P 		254
(-0)
P 		254
B 385
(3)
P 		212.7
(-2.2)
P 		191.9
(-2.8)
P 		186.3
(-3)
P 		327
(1.2)
P 		317
(0.9)
P 		199
C 437.1
(3)
P 		284.3
(-0.1)
P 		201.3
(-1.8)
P 		139.7
(-3)
P 		254.9
(-0.7)
P 		246.4
(-0.8)
P 		297
avr 331.5
(3) 		292.7
(1.6) 		173.6
(-2.8) 		167.1
(-3) 		280
(1.1) 		272.5
(0.8) 		164
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182265_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.499
Sequence Type Exemplar sequence
Representative Public ID ZK484.3 NCBI
Target Description ZK484.3 /REP_DB=WormBase Gene ID /WP=CE15341 /TR=O44895 /GB=AAK39389.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059350(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059350 NCBI Caenorhabditis elegans ZK484.3 (ZK484.3) mRNA, complete cds. 11/11 None
SNAP00000003121 ENSEMBL cdna:SNAP chromosome:CEL140:I:6077128:6078257:-1 10/11 None
GENEFINDER00000003139 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6077128:6078257:-1 10/11 None
ZK484.3.1 ENSEMBL cdna:known chromosome:CEL140:I:6076661:6078257:-1 gene:ZK484.3 11/11 None
ZK484.3.2 ENSEMBL cdna:known chromosome:CEL140:I:6076740:6078259:-1 gene:ZK484.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6076950-6078257(-) 97.8 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK484.3
Entrez Gene 266835 Entrez gene
SwissProt O44895 EMBL-EBI
WormBase CE15341 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39389 Hypothetical protein ZK484.3 [Caenorhabditis elegans] ref|NP_491751.1| ZK484.3 [Caenorhabditis elegans] 3.0E-81
blast AAK39389 Hypothetical protein ZK484.3 [Caenorhabditis elegans] ref|NP_491751.1| ZK484.3 [Caenorhabditis elegans] 5.0E-51
blast CAE72925 Hypothetical protein CBG20245 [Caenorhabditis briggsae] 1.0E-17
blast CAE72925 Hypothetical protein CBG20245 [Caenorhabditis briggsae] 5.0E-15
Sequence
Target Sequence 
>C. ELEGANS:182265_S_AT
caagaaatcggttccgtcaacctcttcagaagccgattcgactactccaaagaagaaggg
atctgctgttaaggcaaagaaagtcacaatcaagactccatcctctgaaccagcagaact
cacttcttcggctgctccggttccagtagctgttccagaagttccaactgctgaggcaac
tacatctgcaaccactacaccaactaccacgaatgctacaattgtgaagaaggaagagac
taaggctgaacagccagttaagaaggttgtcaagaagaaggctatctcgaagaaaccacc
aactaccacaaatgtcacctccacatctgattcatccgccgccgcagcagctgcgaagaa
aaagaagaagccagtcgttccaaaactctcgacaaaaccaaccaaacaatatctggagaa
cgagaagcaaatgcgtttgatggccacccaaaaatgtacctataaggaaccaaaatcact
tgaaaaaagaatttattttatcccattttactcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGAAATCGGTTCCGTCAACCTCT 623 183 414 Antisense
ACCTCTTCAGAAGCCGATTCGACTA 476 87 433 Antisense
TCACAATCAAGACTCCATCCTCTGA 14 629 497 Antisense
CAGCAGAACTCACTTCTTCGGCTGC 537 203 524 Antisense
CCGGTTCCAGTAGCTGTTCCAGAAG 600 265 550 Antisense
GAAGTTCCAACTGCTGAGGCAACTA 481 335 571 Antisense
AGGCAACTACATCTGCAACCACTAC 326 51 587 Antisense
CTACACCAACTACCACGAATGCTAC 586 225 608 Antisense
AACCACCAACTACCACAAATGTCAC 547 147 707 Antisense
AAGCCAGTCGTTCCAAAACTCTCGA 299 149 781 Antisense
TTTATTTTATCCCATTTTACTCATT 659 673 905 Antisense
Sequence Source Affymetrix Proprietary Database