[Home] | [Total List]

[182264_at]

Description Y60A3A.7 /REP_DB=WormBase Gene ID /WP=CE24531 /TR=Q9U1Z6 /GB=CAB60395.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      4grp_highest_8_8 > 21      4grp_high_8_8 > 15      6grp_highest_nonorm > 85      6grp_total > 39      4grp_total > 0      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 973
1 2 3 4 range
A 967.8
(-1.8)
P 		917.9
(-2.7)
P 		903.4
(-3)
P 		1223
(3)
P 		320
B 563
(-3)
P 		821.5
(-1.4)
P 		954.1
(-0.6)
P 		1536.4
(3)
P 		973
C 782.3
(-1.4)
P 		615.5
(-3)
P 		916
(-0.1)
P 		1236.8
(3)
P 		621
avr 771
(-3) 		785
(-2.9) 		924.5
(-1.4) 		1332.1
(3) 		561

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 695
1 2 3 4 5 6 range
A 579.7
(-3)
P 		752.3
(0.6)
P 		711.5
(-0.2)
P 		863.3
(2.9)
P 		708.3
(-0.3)
P 		866.5
(3)
P 		287
B 895.4
(2.7)
P 		739.1
(-3)
P 		768.4
(-1.9)
P 		803.6
(-0.6)
P 		840.6
(0.7)
P 		902.4
(3)
P 		163
C 1216.2
(3)
P 		598.2
(-2.3)
P 		821.2
(-0.4)
P 		521.5
(-3)
P 		978.5
(0.9)
P 		790.9
(-0.7)
P 		695
avr 897.1
(3) 		696.5
(-3) 		767
(-0.9) 		729.5
(-2) 		842.5
(1.4) 		853.3
(1.7) 		201
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 352.4
(3)
P 		199.2
(-2.3)
P 		236.2
(-1)
P 		179
(-3)
P 		173
B 179.6
(-3)
P 		202.9
(-2.1)
P 		221.1
(-1.3)
P 		327.4
(3)
P 		148
C 259
(0.5)
P 		176.9
(-3)
P 		319.3
(3)
P 		208.5
(-1.7)
P 		142
avr 263.7
(3) 		193
(-3) 		258.9
(2.6) 		238.3
(0.8) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 346
1 2 3 4 5 6 range
A 106.9
(-3)
P 		267.6
(3)
P 		154.9
(-1.2)
P 		219
(1.2)
P 		213.7
(1)
P 		211
(0.9)
P 		161
B 311.6
(1.8)
P 		246
(-0.7)
P 		186.6
(-3)
P 		212.8
(-2)
P 		341.5
(3)
P 		336.5
(2.8)
P 		155
C 450.8
(3)
P 		182.5
(-1.7)
P 		209
(-1.2)
P 		104.9
(-3)
P 		316.6
(0.7)
P 		264.8
(-0.2)
P 		346
avr 289.8
(3) 		232
(-0.1) 		183.5
(-2.8) 		178.9
(-3) 		290.6
(3) 		270.8
(1.9) 		112
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182264_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14155
Sequence Type Exemplar sequence
Representative Public ID Y60A3A.7 NCBI
Target Description Y60A3A.7 /REP_DB=WormBase Gene ID /WP=CE24531 /TR=Q9U1Z6 /GB=CAB60395.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075462(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075462 NCBI Caenorhabditis elegans Y60A3A.7 (Y60A3A.7) mRNA, complete cds. 11/11 A 
GENEFINDER00000032838 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19953494:19956820:1 11/11 None
Y60A3A.7 ENSEMBL cdna:known chromosome:CEL140:V:19953486:19956841:1 gene:Y60A3A.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032803 7/11 Cross Hyb Matching Probes None
SNAP00000032804 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19953493-19956820(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y60A3A.7
Entrez Gene 180309 Entrez gene
SwissProt Q9U1Z6 EMBL-EBI
WormBase CE24531 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15054_AT late embryogenesis abundant protein, putative / LEA protein, putative at
ATH1-121501:252132_AT late embryogenesis abundant protein, putative / LEA protein, putative at
CANINE:1604780_AT similar to alpha/beta hydrolase domain containing protein 3 cfa
CANINE_2:CFAAFFX.27934.1.S1_S_AT similar to alpha/beta hydrolase domain containing protein 3 cfa
DROSGENOME1:153239_AT dm
DROSOPHILA_2:1630623_A_AT dm
CHICKEN:GGAAFFX.9485.1.S1_AT similar to lung alpha/beta hydrolase fold protein 3 gga
U133_X3P:HS.13377.0.S1_3P_AT abhydrolase domain containing 3 hs
HG-U133A_2:213017_AT abhydrolase domain containing 3 hs
HG-U133_PLUS_2:213017_AT abhydrolase domain containing 3 hs
HG-U133A:213017_AT abhydrolase domain containing 3 hs
HG-U95AV2:41857_R_AT abhydrolase domain containing 3 hs
HG-U95D:78769_R_AT Abhydrolase domain containing 3 hs
HG-U133_PLUS_2:241940_AT Abhydrolase domain containing 3 hs
HG-U133B:241940_AT Abhydrolase domain containing 3 hs
HG-U95D:87121_AT Abhydrolase domain containing 3 hs
HU35KSUBB:RC_T50387_AT Abhydrolase domain containing 3 hs
U133_X3P:HS.188270.0.A1_3P_AT Abhydrolase domain containing 3 hs
MOE430A:1417946_AT abhydrolase domain containing 3 mm
MOUSE430A_2:1417946_AT abhydrolase domain containing 3 mm
MOUSE430_2:1417946_AT abhydrolase domain containing 3 mm
MU19KSUBA:TC20619_AT Abhydrolase domain containing 3, mRNA (cDNA clone MGC:30497 IMAGE:4234600) mm
MU11KSUBA:AA675331_RC_AT Abhydrolase domain containing 3, mRNA (cDNA clone MGC:30497 IMAGE:4234600) mm
RG-U34C:RC_AI227905_AT abhydrolase domain containing 3 (predicted) rn
RAE230B:1382137_AT abhydrolase domain containing 3 (predicted) rn
RAT230_2:1382137_AT abhydrolase domain containing 3 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB60395 Hypothetical protein Y60A3A.7 [Caenorhabditis elegans] ref|NP_507863.1| Y60A3A.7 [Caenorhabditis elegans] 0.0
blast AAA82365 Hypothetical protein C44C1.5a [Caenorhabditis elegans] ref|NP_001024458.1| C44C1.5a [Caenorhabditis elegans] sp|Q18610|YYC5_CAEEL Hypothetical UPF0017 protein C44C1.5 in chromosome X 1.0E-171
blast CAE63589 Hypothetical protein CBG08080 [Caenorhabditis briggsae] 1.0E-167
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507863.1 1 2-24
Y60A3A.7 1 2-24
GENEFINDER00000032838 1 2-24
Sequence
Target Sequence 
>C. ELEGANS:182264_AT
aaggccaggaaattcggatgcggtttttcaatgggaggaatgattctctggaactatctg
gcaaaggtcggtgagaatgcggatttggacggtggaatgattgtatcgtctccctgggag
gctagcgcagcttctgactctatcgagctctttgtgccacggatgctgttcaattcattc
atagccaagaatctgaccagtcttgtgagcccataccgccaccttttcgccgatctcatc
gactttgacaatgtctgcaaatccaagacaatccgaggattcgatgagaacttcattgtt
ccgatgttcgggtttaaggattgtgccgagtattacacaactgcatcgctggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGCCAGGAAATTCGGATGCGGTT 97 161 550 Antisense
CGGATGCGGTTTTTCAATGGGAGGA 279 243 564 Antisense
GGAACTATCTGGCAAAGGTCGGTGA 411 529 599 Antisense
GTGGAATGATTGTATCGTCTCCCTG 299 491 641 Antisense
TCGTCTCCCTGGGAGGCTAGCGCAG 248 605 655 Antisense
TGACTCTATCGAGCTCTTTGTGCCA 291 571 684 Antisense
GTGCCACGGATGCTGTTCAATTCAT 68 479 703 Antisense
GAATCTGACCAGTCTTGTGAGCCCA 690 327 738 Antisense
TCGCCGATCTCATCGACTTTGACAA 348 599 776 Antisense
GAACTTCATTGTTCCGATGTTCGGG 645 349 837 Antisense
AGTATTACACAACTGCATCGCTGGC 286 63 878 Antisense
Sequence Source Affymetrix Proprietary Database