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[182263_at]

Description C16D9.8 /REP_DB=WormBase Gene ID /WP=CE06844 /TR=Q22903 /GB=AAB18287.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 40
(-1.5)
A 		18.3
(-3)
A 		48.9
(-0.9)
A 		107.5
(3)
A 		89
B 60.8
(2.6)
A 		12.4
(-3)
A 		64.4
(3)
A 		33.3
(-0.6)
A 		52
C 36.5
(-1.6)
A 		51.7
(-0.9)
A 		6.7
(-3)
A 		135.3
(3)
P 		129
avr 45.8
(-1.3) 		27.5
(-3) 		40
(-1.8) 		92
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 23.1
(-2.3)
A 		39.7
(-1.2)
A 		22.4
(-2.3)
A 		64.9
(0.3)
A 		108
(3)
M 		11.2
(-3)
A 		97
B 11.1
(-3)
A 		25.9
(-2.3)
A 		34.4
(-1.8)
A 		45.9
(-1.2)
A 		129.6
(3)
P 		26.4
(-2.2)
A 		119
C 5
(-3)
A 		63.7
(1.3)
A 		7
(-2.9)
A 		30.5
(-1.1)
A 		86.2
(3)
P 		6.1
(-2.9)
A 		81
avr 13.1
(-3) 		43.1
(-1.1) 		21.3
(-2.5) 		47.1
(-0.8) 		107.9
(3) 		14.6
(-2.9) 		95
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 14.6
(2.4)
A 		4
(-3)
A 		12.8
(1.5)
A 		15.7
(3)
A 		12
B 19.4
(3)
A 		3.1
(-3)
A 		14.9
(1.3)
A 		7.1
(-1.5)
A 		16
C 12.1
(-0.1)
A 		14.9
(0.7)
A 		2.3
(-3)
A 		22.8
(3)
P 		21
avr 15.4
(3) 		7.3
(-3) 		10
(-1) 		15.2
(2.9) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 4.3
(-2.7)
A 		14.1
(-0.7)
A 		4.9
(-2.6)
A 		16.5
(-0.2)
A 		32.6
(3)
M 		2.7
(-3)
A 		30
B 3.9
(-3)
A 		8.6
(-2.4)
A 		8.4
(-2.4)
A 		12.2
(-2)
A 		52.7
(3)
P 		9.8
(-2.3)
A 		49
C 1.8
(-3)
A 		19.4
(1)
A 		1.8
(-3)
A 		6.1
(-2)
A 		27.9
(3)
P 		2
(-3)
A 		26
avr 3.3
(-3) 		14
(-1.1) 		5
(-2.7) 		11.6
(-1.6) 		37.7
(3) 		4.8
(-2.7) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182263_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11799
Sequence Type Exemplar sequence
Representative Public ID C16D9.8 NCBI
Target Description C16D9.8 /REP_DB=WormBase Gene ID /WP=CE06844 /TR=Q22903 /GB=AAB18287.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072728(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072728 NCBI Caenorhabditis elegans C16D9.8 (C16D9.8) mRNA, complete cds. 11/11 None
GENEFINDER00000043383 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8263980:8265912:-1 9/11 None
C16D9.8 ENSEMBL cdna:known chromosome:CEL140:V:8263980:8266139:-1 gene:C16D9.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043381 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8263980-8266140(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16D9.8
Entrez Gene 182689 Entrez gene
SwissProt Q22903 EMBL-EBI
WormBase CE06844 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB18287 Hypothetical protein C16D9.8 [Caenorhabditis elegans] ref|NP_505129.1| C16D9.8 [Caenorhabditis elegans] 1.0E-35
blast AAB18287 Hypothetical protein C16D9.8 [Caenorhabditis elegans] ref|NP_505129.1| C16D9.8 [Caenorhabditis elegans] 7.0E-17
Sequence
Target Sequence 
>C. ELEGANS:182263_AT
atatttgttgaagctcgtggtcgatacgaatatatcgaagaatcagatcttccagctttc
tattcaatgagaagcgctcaaatggctcaaaaagcacagctcgctccacagctggcagca
atcccacaggacccttatcagcagtacattccttaccaaatgtatcaacaatttgaaata
cctcagcaatacagcccatttgcggtgtatagtcctgtatatagaccacaagcagctcca
gtagctccacctccacaattccaagctgctcgtccagcaccaatccagtaccatccaatg
gcatactatcatcacgccgggcaaaccggacagccacaagtggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATTTGTTGAAGCTCGTGGTCGAT 449 17 55 Antisense
GAATCAGATCTTCCAGCTTTCTATT 646 327 94 Antisense
TGGCTCAAAAAGCACAGCTCGCTCC 520 543 137 Antisense
ACAGGACCCTTATCAGCAGTACATT 135 107 180 Antisense
ATCAGCAGTACATTCCTTACCAAAT 87 29 191 Antisense
AAATACCTCAGCAATACAGCCCATT 99 117 230 Antisense
AGCCCATTTGCGGTGTATAGTCCTG 63 83 247 Antisense
TGTATATAGACCACAAGCAGCTCCA 680 559 270 Antisense
CACCAATCCAGTACCATCCAATGGC 218 201 332 Antisense
TACTATCATCACGCCGGGCAAACCG 237 645 358 Antisense
GGCAAACCGGACAGCCACAAGTGGC 469 533 374 Antisense
Sequence Source Affymetrix Proprietary Database